Posts by Tonno

1) Message boards : RALPH@home bug list : minirosetta 2.12 (Message 5143) Posted 21 May 2010 by Tonno Post: Some similar errors in other WUs, for example this one. ERROR: unrecognized aa CL ERROR:: Exit from: ....srccoreiopdbfile_data.cc line: 530 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish
2) Message boards : RALPH@home bug list : minirosetta 2.12 (Message 5141) Posted 20 May 2010 by Tonno Post: Error after few seconds: 1813746 ERROR: unrecognized aa HOH ERROR:: Exit from: ....srccoreiopdbfile_data.cc line: 530 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Windows Vista, BOINC 6.10.45
3) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5107) Posted 23 Mar 2010 by Tonno Post: I checked some validate errors and I found that happens in WUs that has been suspended by the BOINC manager (6.10.36) to let other WUs start. This is a common problem that I see in the recent versions (6.X). The BOINC manager doesnâ€™t let finish the WU, but suspended it to start another of the same project. I have 10 RALPH WUs that has been suspended at 60-80% (taking a lot of memory and making the computer to be really slow and the BOINC manager to crash sometimes) and then, when resumed, they finished rapidly and give validate error. In the other PC with version 5.10.45 of the BOINC manager, I haven't such a problem and no validate error (on a total of 27 WUs). Someone other can confirm that?
4) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5106) Posted 23 Mar 2010 by Tonno Post: 1774657 1776020 1776022 ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 137 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish
5) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5092) Posted 12 Mar 2010 by Tonno Post: The "fcDE-W3" WUs have something wrong. The graphics show only one structure of three and the stage and energy are always at "zero".
6) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5077) Posted 16 Feb 2010 by Tonno Post: 1746875 <core_client_version>6.10.32</core_client_version> <![CDATA[ <message> Input file t286__boinc_corebuild_round2_rerun_sel_core_1.5.broker_corebuild_tex.boinc.flags missing or invalid: -119 </message> ]]>
7) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5075) Posted 16 Feb 2010 by Tonno Post: ERROR: Option file open failed for: relax_options_lr5_rama09_mix01_it03_run01_A_yfsong 1744059 1744057 1743941
8) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4764) Posted 29 Mar 2009 by Tonno Post: Some WUs take longer to complete than the default runtime. I'm not sure, but it seems that are all frb_1_8_template_enriched_hb_t286. For exemple this one. link
9) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4761) Posted 27 Mar 2009 by Tonno Post: error after few seconds on windows XP. Also the other WU gives an error. Is the same error already posted for Mac: ERROR: ERROR: FragmentIO: could not open file aa9mer.1_3.gz
10) Message boards : RALPH@home bug list : minirosetta v1.55 bug thread (Message 4630) Posted 1 Feb 2009 by Tonno Post: The 1.57 version doesn't show the protein in the searching box.
11) Message boards : RALPH@home bug list : minirosetta v1.55 bug thread (Message 4627) Posted 1 Feb 2009 by Tonno Post: Compute error <core_client_version>6.4.5</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> [2009- 1-31 18: 7:40:] :: BOINC:: Initializing ... ok. [2009- 1-31 18: 7:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev26003.zip Unpacking WU data ... Unpacking data: ../../projects/ralph.bakerlab.org/mtyka_lr5_D_score12_normal.zip Setting database description ... Setting up checkpointing ... Initializing score function: Initializing relax mover: Starting protocol... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on PDB structure: S_rb1_2d4f_native_0000_withcon_00001 <--- S_rb1_2d4f_native_0000.pdb Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x005124B3 write attempt to address 0x3FF00000 Engaging BOINC Windows Runtime Debugger...
12) Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.38 (Message 4296) Posted 24 Oct 2008 by Tonno Post: Version 1.39 error: <core_client_version>6.2.19</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> recovering checkpoint of tag S_1D5WA_2_00000001 with id abrelax_rg_state Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x008106CA read attempt to address 0x00000000 Engaging BOINC Windows Runtime Debugger...
13) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4199) Posted 10 Sep 2008 by Tonno Post: This WU ended after 1 second: <core_client_version>6.2.18</core_client_version> <![CDATA[ <message> Funzione non corretta. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: unrecognized aa HOH ERROR:: Exit from: ....srccoreiopdbfile_data.cc line: 468 called boinc_finish </stderr_txt> ]]> I'm going to try and write up something tomorrow about the new scientific improvements we're testing with this latest version of minirosetta. Thanks, we are always happy to now about scientific improvements. :)
14) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.33 (Message 4190) Posted 6 Sep 2008 by Tonno Post: 4 computation errors with this message: <core_client_version>6.2.18</core_client_version> <![CDATA[ <message> Funzione non corretta. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: Illegal attempt to score with non-identical atom set between pose and etable ERROR:: Exit from: ....srccorescoringetableEtableEnergy.cc line: 39 called boinc_finish </stderr_txt> ]]> Maybe the reason is an upgrade of the computer from XP SP2 to SP3. I'm sorry for that.
15) Message boards : RALPH@home bug list : Bug Reports for Rosetta Mini Versions 1.+ (Message 3870) Posted 9 Apr 2008 by Tonno Post: Rosetta Mini 1.10 error on Windows XP. http://ralph.bakerlab.org/result.php?resultid=870821
16) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 3857) Posted 8 Apr 2008 by Tonno Post: Is it right to post here simple compute error? I hope this help... (sorry for my english) http://ralph.bakerlab.org/result.php?resultid=884441 <core_client_version>5.10.45</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 3600 # random seed: 1417895 ====================================================== DONE :: 1 starting structures 3712.81 cpu seconds This process generated 1 decoys from 1 attempts 0 starting pdbs were skipped ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> <message> <file_xfer_error> <file_name>BAK1b0o_loop_model_auto1_3456_38_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]>