1)
Message boards :
Number crunching :
Reached daily quota of n results
(Message 5215)
Posted 6 Nov 2010 by ramostol Post: Today i receive this message on both my pc: the first says "quota of 4 results" and the second "quota of 2 results" and doesn't download any wu. I assume that this happens on those among your computers that display quite a few "Compute errors". The server limits your downloads until your computers have "proven themselves" by crunching the downloaded tasks successfully. If they manage to do so, your quota will increase. |
2)
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RALPH@home bug list :
minirosetta 2.03
(Message 5028)
Posted 6 Jan 2010 by ramostol Post: One wu errored out in the recent bunch of tasks: job_boinc_t318__filtered_loopbuild_threading_tex_IGNORE_THE_REST_13730_7_0 ERROR: can't find residue type at pos 11in sequence MTQVLVRNGI QAVGDGLTSL IIVGKKSVLK NVTFEGKFKE VAQKFVTDGD SWNSMISRIP ASGRHPLHYE LAHLITVPDASSRGNTPTNA HSIYKELKPI NYPEDTKNVH FVLFAEYPDV LSHVAAIART FCKFSMKTSG IRELNVNIDV VCDKLTNEDAVFLTDLSESV RETARLIDTP ANILTTDALV DEAVKVGNAT GSKITVIRGE ELLKAGFGGI YHVGKAGPTP PAFVVLSHEVPGSTEHIALV GKGVVYDTGG LQIKTKTGMP NMKRDMGGAA GMLEAYSALV KHGFSQTLHA CLCIVENNVS PIANKPDDIIKMLSGKTVEI NNTDAEGRLI LADGVFYAKE TLKATTIFDM ATLTGAQAWL SGRLHGAAMT NDEQLENEII KAGKASGDLVAPMLFAPDLF FGDLKSSIAD MKNSNLGKMD GPPSAVAGLL IGAHIGFGEG LRWLHLDIAA PAEVGDRGTG YGPALFSTLLGKYTSVPMLK Q ERROR:: Exit from: src/core/chemical/util.cc line: 379 BOINC:: Error reading and gzipping output datafile: default.out |
3)
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minirosetta v1.55 bug thread
(Message 4651)
Posted 2 Feb 2009 by ramostol Post:
At last I managed to grab some 1.57 wus. I had time to observe that at least the first two succeeded, my first miniRosetta successes for a month. In a few hours we shall see if the rest survived the night and the network settings. Then, no news = good news. Cheers! |
4)
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minirosetta v1.48-1.51 bug thread
(Message 4548)
Posted 26 Jan 2009 by ramostol Post:
Since the computer in question is connected to the internet only in weekends I cannot be of much use without lots of wus... But -- in connection with modified object -- this computer isn't doing much more that computing BOINC projects at the moment, and the sole configuration made by yours truly when connecting to the Rosetta server was changing the runtime to keep within limits. Since my first (of three) Rosetta crash the last months (that one using BOINC 6.3.14) made it necessary to manually delete all project files before reattaching to get up and running, I wonder if some errors are created outside of miniRosetta itself... |
5)
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minirosetta v1.48-1.51 bug thread
(Message 4529)
Posted 24 Jan 2009 by ramostol Post: After Rosetta 1.47 totally crashing on my MacBook on 27 Dec 2008 (after one week of faultless computing, within hours after connecting to the Rosetta server; still haven't recovered) I have waited for an opportunity to test what is happening on Ralph. At last I received two 1.53-tasks - however, they show exactly the same symptoms as observed using 1.47 on Rosetta: abinitio_norelax_homfrag_natfrag_129_B_1pxuA_SAVE_ALL_OUT_7037_1_0 <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> This one crashed after 30 sec. ---- abinitio_norelax_homfrag_natfrag_129_B_1ctf__SAVE_ALL_OUT_7037_1_0 <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> This one is reported using Boinc 6.6.2 but computed with 6.6.1. It started out relatively normally. But after about one hour’s computing time, steadily increasing "To completion" time, progress stuck at 0.240%, I had to conclude that this wu would turn into an everlasting task. "Show graphics" did not respond, even "Quit Boinc" was greyed out. After rebooting to install Boinc 6.6.2, and logging on as administrative and non-administrative user the wu quit after restarting using 32 sec. I should add that I mostly use this computer as a non-administrator, which may have some bearing (on my PPC it influences my graphics display at least). However, I do not receive more units to check, so I can not test the behaviour when changing configurations. ---- PS For the curious: This is the report from the first wu crashing on Dec 27 2008 on Rosetta (I haven't too much time analyzing such data....). The error message is a bit more extensive than the messages for the rest of the bunch: http://boinc.bakerlab.org/rosetta/result.php?resultid=216101560 (obsolete link) Task ID 216101560 Name 1r9pA_BOINC_MPZN_vanilla_abrelax_5901_6648_0 Workunit 196949149 Created 21 Dec 2008 12:53:24 UTC Sent 21 Dec 2008 13:16:26 UTC Received 27 Dec 2008 14:15:44 UTC Server state Over Outcome Client error Client state Compute error Exit status 193 (0xc1) Computer ID 936507 Report deadline 31 Dec 2008 13:16:26 UTC CPU time 20.36099 stderr out <core_client_version>6.5.0</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> minirosetta_1.47_i686-apple-darwin(69428,0xa031b720) malloc: *** error for object 0x1748220: Non-aligned pointer being freed (2) *** set a breakpoint in malloc_error_break to debug minirosetta_1.47_i686-apple-darwin(69428,0xa031b720) malloc: *** error for object 0x1748220: incorrect checksum for freed object - object was probably modified after being freed. *** set a breakpoint in malloc_error_break to debug SIGBUS: bus error Crashed executable name: minirosetta_1.47_i686-apple-darwin built using BOINC library version 6.5.0 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.5.6 build 9G55 Sat Dec 27 14:45:29 2008 |
6)
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RALPH@home bug list :
minirosetta v1.47 bug thread
(Message 4419)
Posted 16 Dec 2008 by ramostol Post: This start is none too good I'm afraid. All cc2_1_8_mammoth-tasks are crashing after about 1 minute of computing. An example: cc2_1_8_mammoth_fa_cst_hb_t369__IGNORE_THE_REST_1S3QA_7_6585_1_0 <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> minirosetta_1.47_i686-apple-darwin(90916,0xa0538fa0) malloc: *** error for object 0x1747d40: Non-aligned pointer being freed (2) *** set a breakpoint in malloc_error_break to debug SIGBUS: bus error |
7)
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RALPH@home bug list :
minirosetta v1.46 bug thread
(Message 4412)
Posted 14 Dec 2008 by ramostol Post: So, either the guideline should change, or the tasks should change. I suggest a look at the guidelines. In my Rosetta experience some current errors like to appear only after at least 3-4 hours of computing, which makes testing on Ralph with a default runtime of 1 hour somewhat questionable. |
8)
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minirosetta v1.45 bug thread
(Message 4397)
Posted 7 Dec 2008 by ramostol Post: Sorry for the double posting. I was too careless with the preview function... |
9)
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minirosetta v1.45 bug thread
(Message 4396)
Posted 7 Dec 2008 by ramostol Post: Suddenly received a lot of wus as second cruncher. Most of them succeeded, but these two errored out: Task ID 1219133 (the first cruncher got a compute error) Name ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1 Workunit 1075263 Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) CPU time 3287.45 stderr out <core_client_version>6.2.18</core_client_version> <![CDATA[ <stderr_txt> WARNING! cannot write gzipped stream to file ../../projects/ralph.bakerlab.org/ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1_0 ====================================================== DONE :: 1 starting structures 3286.76 cpu seconds This process generated 4 decoys from 4 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 20.9957354429277 Granted credit 0 application version 1.45 ------------------- Task ID 1219112 (the first cruncher also got a compute error) Task ID 1219112 Name ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t317__mtyka_IGNORE_THE_REST_2ESBA_11_5963_2_1 Workunit 1074442 Server state Over Outcome Client error Client state Compute error Exit status 193 (0xc1) CPU time 1727.848 stderr out <core_client_version>6.2.18</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> SIGBUS: bus error Crashed executable name: minirosetta_1.45_i686-apple-darwin built using BOINC library version 6.5.0 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.5.5 build 9F33 Sat Dec 6 21:18:39 2008 sh: /usr/bin/atos: No such file or directory 0 0x0064c07b SIGPIPE: write on a pipe with no reader 1 0x0051feba SIGPIPE: write on a pipe with no reader 2 0x9393009b SIGPIPE: write on a pipe with no reader 3 0xffffffff SIGPIPE: write on a pipe with no reader 4 0x0001596f SIGPIPE: write on a pipe with no reader 5 0x000830f3 SIGPIPE: write on a pipe with no reader 6 0x000fa4e2 SIGPIPE: write on a pipe with no reader 7 0x001938b1 SIGPIPE: write on a pipe with no reader 8 0x001afe27 SIGPIPE: write on a pipe with no reader 9 0x001b5381 SIGPIPE: write on a pipe with no reader 10 0x00009a87 SIGPIPE: write on a pipe with no reader 11 0x0000292e SIGPIPE: write on a pipe with no reader 12 0x00002855 Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x938f7e62 ecx: 0xbfffaa5c edx: 0x938c34a6 edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffaa98 esp: 0xbfffaa5c ss: 0x0000001f efl: 0x00000206 eip: 0x938c34a6 cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: [[etc etc]] Exiting... </stderr_txt> ]]> Validate state Invalid Claimed credit 11.0351304182852 Granted credit 0 application version 1.45 |
10)
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minirosetta v1.45 bug thread
(Message 4395)
Posted 7 Dec 2008 by ramostol Post: Suddenly received a lot of wus as second cruncher. Most of them succeeded, but these two errored out: Task ID 1219133 (the first cruncher got a compute error) Name ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1 Workunit 1075263 Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) CPU time 3287.45 stderr out <core_client_version>6.2.18</core_client_version> <![CDATA[ <stderr_txt> WARNING! cannot write gzipped stream to file ../../projects/ralph.bakerlab.org/ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1_0 ====================================================== DONE :: 1 starting structures 3286.76 cpu seconds This process generated 4 decoys from 4 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 20.9957354429277 Granted credit 0 application version 1.45 ------------------- Task ID 1219112 (the first cruncher also got a compute error) Task ID 1219112 Name ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t317__mtyka_IGNORE_THE_REST_2ESBA_11_5963_2_1 Workunit 1074442 Server state Over Outcome Client error Client state Compute error Exit status 193 (0xc1) CPU time 1727.848 stderr out <core_client_version>6.2.18</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> SIGBUS: bus error Crashed executable name: minirosetta_1.45_i686-apple-darwin built using BOINC library version 6.5.0 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.5.5 build 9F33 Sat Dec 6 21:18:39 2008 sh: /usr/bin/atos: No such file or directory 0 0x0064c07b SIGPIPE: write on a pipe with no reader 1 0x0051feba SIGPIPE: write on a pipe with no reader 2 0x9393009b SIGPIPE: write on a pipe with no reader 3 0xffffffff SIGPIPE: write on a pipe with no reader 4 0x0001596f SIGPIPE: write on a pipe with no reader 5 0x000830f3 SIGPIPE: write on a pipe with no reader 6 0x000fa4e2 SIGPIPE: write on a pipe with no reader 7 0x001938b1 SIGPIPE: write on a pipe with no reader 8 0x001afe27 SIGPIPE: write on a pipe with no reader 9 0x001b5381 SIGPIPE: write on a pipe with no reader 10 0x00009a87 SIGPIPE: write on a pipe with no reader 11 0x0000292e SIGPIPE: write on a pipe with no reader 12 0x00002855 Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x938f7e62 ecx: 0xbfffaa5c edx: 0x938c34a6 edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffaa98 esp: 0xbfffaa5c ss: 0x0000001f efl: 0x00000206 eip: 0x938c34a6 cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x12b2fff /Library/Application Support/BOINC Data/slots/0/../../projects/ralph.bakerlab.org/minirosetta_1.45_i686-apple-darwin 0x3e000000 - 0x3e045fff /System/Library/Frameworks/GLUT.framework/Versions/A/GLUT 0x900c1000 - 0x9028ffff /System/Library/Frameworks/Security.framework/Versions/A/Security 0x90290000 - 0x90342fff /usr/lib/libcrypto.0.9.7.dylib 0x90343000 - 0x90347fff /usr/lib/system/libmathCommon.A.dylib 0x90348000 - 0x9037ffff /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration 0x90380000 - 0x90413fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS 0x90414000 - 0x90453fff /System/Library/PrivateFrameworks/CoreMediaIOServicesPrivate.framework/Versions/A/CoreMediaIOServicesPrivate 0x90454000 - 0x904dbfff /usr/lib/libsqlite3.0.dylib 0x904dc000 - 0x90539fff /usr/lib/libstdc++.6.dylib 0x9056d000 - 0x90579fff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x9057a000 - 0x9065ffff /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData 0x90660000 - 0x90667fff /usr/lib/libgcc_s.1.dylib 0x90668000 - 0x90686fff /usr/lib/libresolv.9.dylib 0x906d7000 - 0x90791fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices 0x90792000 - 0x907a2fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis 0x907a3000 - 0x90a1efff /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation 0x90a1f000 - 0x90a5dfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x90a6b000 - 0x90a73fff /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration 0x90bf4000 - 0x913f1fff /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit 0x913f2000 - 0x91434fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices 0x91435000 - 0x91459fff /usr/lib/libxslt.1.dylib 0x9145a000 - 0x91460fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print 0x91461000 - 0x9152cfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync 0x91622000 - 0x9162bfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition 0x9162c000 - 0x91764fff /usr/lib/libicucore.A.dylib 0x92983000 - 0x929fffff /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio 0x92a00000 - 0x92dbefff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib 0x92dfa000 - 0x92e10fff /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo 0x92e14000 - 0x92e21fff /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x92ebe000 - 0x92ebefff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib 0x92ebf000 - 0x92f3efff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit 0x92f3f000 - 0x93020fff /usr/lib/libxml2.2.dylib 0x93280000 - 0x9330bfff /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit 0x9330c000 - 0x9330cfff /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices 0x9330d000 - 0x93335fff /usr/lib/libcups.2.dylib 0x93336000 - 0x93339fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help 0x9333a000 - 0x93344fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound 0x934d9000 - 0x934dbfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI 0x934dc000 - 0x93536fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText 0x935f9000 - 0x93600fff /usr/lib/libbsm.dylib 0x93601000 - 0x93603fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib 0x9363a000 - 0x936e8fff /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit 0x936e9000 - 0x9376dfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork 0x9376e000 - 0x937fafff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices 0x937fb000 - 0x9384bfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices 0x9384c000 - 0x93864fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting 0x93865000 - 0x938c1fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering 0x938c2000 - 0x93a22fff /usr/lib/libSystem.B.dylib 0x93a23000 - 0x93aa0fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib 0x93aa1000 - 0x93eb1fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 0x93eef000 - 0x93f69fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore 0x93f6a000 - 0x93f89fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib 0x94280000 - 0x942affff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE 0x942b0000 - 0x942f9fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata 0x943e0000 - 0x94702fff /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime 0x94703000 - 0x94703fff /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa 0x947b0000 - 0x947b0fff /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib 0x9487b000 - 0x94d4cfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x94d53000 - 0x953effff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics 0x953f0000 - 0x9541afff /System/Library/PrivateFrameworks/CoreMediaPrivate.framework/Versions/A/CoreMediaPrivate 0x9548e000 - 0x95518fff /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv 0x95519000 - 0x95527fff /usr/lib/libz.1.dylib 0x95528000 - 0x95528fff /System/Library/PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer 0x95541000 - 0x95551fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis 0x95552000 - 0x95556fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib 0x9556f000 - 0x9556ffff /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon 0x9557c000 - 0x955b6fff /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI 0x955b7000 - 0x958befff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox 0x958cf000 - 0x958e5fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices 0x958e6000 - 0x958e7fff /usr/lib/libffi.dylib 0x958e8000 - 0x9598ffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD 0x959e0000 - 0x95a0dfff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib 0x95b18000 - 0x95bc8fff /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos 0x96227000 - 0x96252fff /usr/lib/libauto.dylib 0x962a3000 - 0x963d5fff /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x96449000 - 0x9658ffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO 0x96590000 - 0x96590fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate 0x96591000 - 0x96671fff /usr/lib/libobjc.A.dylib 0x96673000 - 0x96706fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink 0x9673e000 - 0x9677dfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib 0x9677e000 - 0x9677efff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices 0x9677f000 - 0x9677ffff /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit 0x96780000 - 0x96847fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage 0x96848000 - 0x96be5fff /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore 0x96be6000 - 0x96c3ffff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x96c43000 - 0x96c57fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture 0x96c6c000 - 0x96c87fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib 0x96c88000 - 0x96c8dfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels 0x96c8e000 - 0x96f68fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore 0x96f69000 - 0x9708dfff /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox Exiting... </stderr_txt> ]]> Validate state Invalid Claimed credit 11.0351304182852 Granted credit 0 application version 1.45 |
11)
Message boards :
Number crunching :
platform x86_64-apple-darwin not found
(Message 4261)
Posted 11 Oct 2008 by ramostol Post: I second. The Rosetta main project works perfectly on my trial MacBook Intel, but the computer receives no Ralph wus from the present queue of tasks, the message in the title being the sole explanation. |
12)
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RALPH@home bug list :
Rosetta mini 1.07
(Message 3784)
Posted 22 Feb 2008 by ramostol Post:
In these matters *I* am the technically challenged with 6 hours computer instruction a generation ago. And I am sorry if my posts appear confusing. However, if I discover a Rosetta process continuously running without (seemingly) using any CPU time I list the active processes on my Mac using the Activities Manager, one item being a Rosetta process using no CPU. The process always at the bottom of the list is "kernel_task", usually occupying around 0.5-2 % CPU time. If it consistently uses 30-40 % I know it is not behaving quite normally. Then I go through the rest of the processes looking for a program using more CPU than appropriate (because it should not be processing anything at the time). I always find such a program, and restarting this program shrinks the CPU usage of kernel_task and normalise the CPU usage of the Rosetta process. I cannot explain the matter, but at least the method works in my situation. |
13)
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RALPH@home bug list :
Rosetta mini 1.07
(Message 3766)
Posted 20 Feb 2008 by ramostol Post: I had noticed a few days ago that an Einstein and a Rosetta Mini task were running together. Both were listed as running, but only the Rosetta task was accruing CPU time. Top confirmed that the E@H task wasn't getting any CPU time. Stopping/starting the daemon got things running properly again and I didn't think anything else of it. I am in no position (and totally unqualified) to check this out, but if this were to happen on my Mac my first question would be: What is the behavior of the kernel_task process? (See <a href="http://ralph.bakerlab.org//forum_thread.php?id=326&nowrap=true#3338">this message</a>.) |
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Message boards :
Current tests :
Help us debug minirosetta.
(Message 3738)
Posted 14 Feb 2008 by ramostol Post: I put "Failures last 24h" on ralph. It can be client errors, invalid results, unsent results etc, i.e. everything else with a complete status. I am hesitant to add this to R@h. I'd rather point out the positive than negative for the good of the project. I wonder what other users think. I have learned my lesson: in Ralph/Rosetta a success is not always a success, and a failure is not always a failure. My native language is not English, but I should think that your "failures" are much more than I personally define as such. Would another word - like noncompletions or whatever - suit everybody's purpose better? |
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Message boards :
RALPH@home bug list :
Bug reports for version 5.93
(Message 3652)
Posted 20 Jan 2008 by ramostol Post: You probably know this now, but anyhow: (Some?) trunc_solit-wus seem unable to create proper output files. 3 invalid results for trunc_solit_BOINC_ABRELAX_-trunc_solit-_2934_25 |
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Message boards :
RALPH@home bug list :
Bug reports for 5.90/5.91
(Message 3580)
Posted 27 Dec 2007 by ramostol Post: Another post I read in Rosetta said that there is a rule that will stop the Rosetta WU once it has run for 6 times its preference time, I have yet to verify this rule or prove it works. Actually 4 times its preference time. Observed and proven. |
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RALPH@home bug list :
Bug reports for 5.84
(Message 3493)
Posted 2 Dec 2007 by ramostol Post: A non-fatal issue, and a general one I expect, but this time concerning a 5.85 task. The watchdog report to Bakerlab shows no problems at all: http://ralph.bakerlab.org/result.php?resultid=679198: 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <stderr_txt> Rosetta@home Macintosh Stack Size checker. Original size: 0. Maximum size: 8388608. RLIM_INFINITY 0 # cpu_run_time_pref: 14400 # random seed: 1808482 Rosetta@home Macintosh Stack Size checker. Original size: 0. Maximum size: 8388608. RLIM_INFINITY 0 # cpu_run_time_pref: 14400 ====================================================== DONE :: 1 starting structures 13106.9 cpu seconds This process generated 7 decoys from 7 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> ]]> From local message file: 30-Nov-2007 21:53:43 [ralph@home] Computation for task 1bk2__BOINC_ABINITIO_VFSCORE25-7-_SKIP3-1bk2_-vf__2623_3_0 finished 30-Nov-2007 21:53:43 [ralph@home] Starting 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0 30-Nov-2007 21:53:44 [ralph@home] Starting task 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0 using rosetta_beta version 585 01-Dec-2007 00:55:27 [ralph@home] Restarting task 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0 using rosetta_beta version 585 The message file confirms that this wu has been restarted. No explanation is given, and the computer was running unattended with no disturbing network connections at the time, so I have no more leads. And I was kind of expecting the watchdog to report 7 decoys from 8 attempts after this restart. |
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Message boards :
RALPH@home bug list :
Bug reports for 5.78
(Message 3357)
Posted 8 Sep 2007 by ramostol Post: Same error -161 after this wu. Computing seems to complete normally, but Boinc/Rosetta finds no result file. |
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Message boards :
RALPH@home bug list :
Bug reports for rosetta_beta_5.77 and rosetta_5.69
(Message 3338)
Posted 30 Aug 2007 by ramostol Post: I commented on a similar problem in a Rosetta message board some time ago (39305). My experience is that if a Boinc project is running using no CPU (more correctly: using so little CPU time that it is practically unnoticeable), it happens because other programs hog the CPU in such a way that the Rosetta crunching is performed not in the Rosetta process but in the kernel_task process. To bring the situation back to normal you may examine the active processes on you computer. If you observe a quite active kernel_task process this would confirm the theory. Then look through all processes to find a program/process using lots of CPU although doing nothing sensible, and quit this program. Then you can see kernel_task shrinking and the Rosetta process using CPU as normally. What I did not mention in my original message is that this is probably also the cause of the occasionally reported problem of Rosetta processes running for days and days without being able to stop. Since Boinc/Rosetta will register the CPU use of the Rosetta process to determine when to terminate the process in accordance with your default settings, it will know nothing of the computing going on inside the kernel_task process and will let the process continue for a looooong time. |
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RALPH@home bug list :
Bug reports for 5.71
(Message 3268)
Posted 7 Jul 2007 by ramostol Post: I have alot of - exit code -1073741819 (0xc0000005) Problems confirmed with this series of wus on Mac: 2ffm_1_NMRREF_1_1pqx_1_idid_model_04IGNORE_THE_REST_idl_2218_10_0 2ffm_3_NMRREF_3_1pqx_1_idid_model_01IGNORE_THE_REST_idl_2218_10_0 Crashed after 6-8 min., could not complete model 1 step 0, thread 2 crashing. Exit status -177 (0xffffffffffffff4f) <message> Maximum disk usage exceeded </message> [[Boinc is allowed 20 Gb disk space]] |
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