Posts by ramostol

1) Message boards : Number crunching : Reached daily quota of n results (Message 5215)
Posted 6 Nov 2010 by ramostol
Post:
Today i receive this message on both my pc: the first says "quota of 4 results" and the second "quota of 2 results" and doesn't download any wu.
What does it means?


Today the same thing.
Sometimes i can dowload a lot of wu without problems, sometimes the project send this message. I cannot download for 24 hours....


I assume that this happens on those among your computers that display quite a few "Compute errors".

The server limits your downloads until your computers have "proven themselves" by crunching the downloaded tasks successfully. If they manage to do so, your quota will increase.
2) Message boards : RALPH@home bug list : minirosetta 2.03 (Message 5028)
Posted 6 Jan 2010 by ramostol
Post:
One wu errored out in the recent bunch of tasks:

job_boinc_t318__filtered_loopbuild_threading_tex_IGNORE_THE_REST_13730_7_0

ERROR: can't find residue type at pos 11in sequence MTQVLVRNGI QAVGDGLTSL IIVGKKSVLK NVTFEGKFKE VAQKFVTDGD SWNSMISRIP ASGRHPLHYE LAHLITVPDASSRGNTPTNA HSIYKELKPI NYPEDTKNVH FVLFAEYPDV LSHVAAIART FCKFSMKTSG IRELNVNIDV VCDKLTNEDAVFLTDLSESV RETARLIDTP ANILTTDALV DEAVKVGNAT GSKITVIRGE ELLKAGFGGI YHVGKAGPTP PAFVVLSHEVPGSTEHIALV GKGVVYDTGG LQIKTKTGMP NMKRDMGGAA GMLEAYSALV KHGFSQTLHA CLCIVENNVS PIANKPDDIIKMLSGKTVEI NNTDAEGRLI LADGVFYAKE TLKATTIFDM ATLTGAQAWL SGRLHGAAMT NDEQLENEII KAGKASGDLVAPMLFAPDLF FGDLKSSIAD MKNSNLGKMD GPPSAVAGLL IGAHIGFGEG LRWLHLDIAA PAEVGDRGTG YGPALFSTLLGKYTSVPMLK Q
ERROR:: Exit from: src/core/chemical/util.cc line: 379
BOINC:: Error reading and gzipping output datafile: default.out
3) Message boards : RALPH@home bug list : minirosetta v1.55 bug thread (Message 4651)
Posted 2 Feb 2009 by ramostol
Post:

Ramostol, this is relevant for you too, i think that's the same bug.
You two, could you set your settings back to restrict to specific days and see if it works now ? It did here :)

At last I managed to grab some 1.57 wus. I had time to observe that at least the first two succeeded, my first miniRosetta successes for a month. In a few hours we shall see if the rest survived the night and the network settings. Then, no news = good news.
Cheers!
4) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4548)
Posted 26 Jan 2009 by ramostol
Post:

*** set a breakpoint in malloc_error_break to debug
minirosetta_1.47_i686-apple-darwin(69428,0xa031b720) malloc: *** error for object 0x1748220: incorrect checksum for freed object - object was probably modified after being freed.




Hi ramostol, thanks for joining ralph. You error is new, i've not seen it on any other machine yet, but at least now we have a chance to cathc it. Shame the trace is giving so little information.

Mike


Since the computer in question is connected to the internet only in weekends I cannot be of much use without lots of wus...

But -- in connection with modified object -- this computer isn't doing much more that computing BOINC projects at the moment, and the sole configuration made by yours truly when connecting to the Rosetta server was changing the runtime to keep within limits. Since my first (of three) Rosetta crash the last months (that one using BOINC 6.3.14) made it necessary to manually delete all project files before reattaching to get up and running, I wonder if some errors are created outside of miniRosetta itself...
5) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4529)
Posted 24 Jan 2009 by ramostol
Post:
After Rosetta 1.47 totally crashing on my MacBook on 27 Dec 2008 (after one week of faultless computing, within hours after connecting to the Rosetta server; still haven't recovered) I have waited for an opportunity to test what is happening on Ralph. At last I received two 1.53-tasks - however, they show exactly the same symptoms as observed using 1.47 on Rosetta:

abinitio_norelax_homfrag_natfrag_129_B_1pxuA_SAVE_ALL_OUT_7037_1_0

<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>

This one crashed after 30 sec.

----

abinitio_norelax_homfrag_natfrag_129_B_1ctf__SAVE_ALL_OUT_7037_1_0

<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>

This one is reported using Boinc 6.6.2 but computed with 6.6.1.

It started out relatively normally. But after about one hour’s computing time, steadily increasing "To completion" time, progress stuck at 0.240%, I had to conclude that this wu would turn into an everlasting task. "Show graphics" did not respond, even "Quit Boinc" was greyed out. After rebooting to install Boinc 6.6.2, and logging on as administrative and non-administrative user the wu quit after restarting using 32 sec.


I should add that I mostly use this computer as a non-administrator, which may have some bearing (on my PPC it influences my graphics display at least). However, I do not receive more units to check, so I can not test the behaviour when changing configurations.

----

PS
For the curious:
This is the report from the first wu crashing on Dec 27 2008 on Rosetta (I haven't too much time analyzing such data....). The error message is a bit more extensive than the messages for the rest of the bunch:

http://boinc.bakerlab.org/rosetta/result.php?resultid=216101560 (obsolete link)

Task ID
216101560
Name
1r9pA_BOINC_MPZN_vanilla_abrelax_5901_6648_0
Workunit
196949149
Created
21 Dec 2008 12:53:24 UTC
Sent
21 Dec 2008 13:16:26 UTC
Received
27 Dec 2008 14:15:44 UTC
Server state
Over
Outcome
Client error
Client state
Compute error
Exit status
193 (0xc1)
Computer ID
936507
Report deadline
31 Dec 2008 13:16:26 UTC
CPU time
20.36099
stderr out
<core_client_version>6.5.0</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
minirosetta_1.47_i686-apple-darwin(69428,0xa031b720) malloc: *** error for object 0x1748220: Non-aligned pointer being freed (2)
*** set a breakpoint in malloc_error_break to debug
minirosetta_1.47_i686-apple-darwin(69428,0xa031b720) malloc: *** error for object 0x1748220: incorrect checksum for freed object - object was probably modified after being freed.

*** set a breakpoint in malloc_error_break to debug
SIGBUS: bus error

Crashed executable name: minirosetta_1.47_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.6 build 9G55
Sat Dec 27 14:45:29 2008

6) Message boards : RALPH@home bug list : minirosetta v1.47 bug thread (Message 4419)
Posted 16 Dec 2008 by ramostol
Post:
This start is none too good I'm afraid.

All cc2_1_8_mammoth-tasks are crashing after about 1 minute of computing.

An example:

cc2_1_8_mammoth_fa_cst_hb_t369__IGNORE_THE_REST_1S3QA_7_6585_1_0

<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
minirosetta_1.47_i686-apple-darwin(90916,0xa0538fa0) malloc: *** error for object 0x1747d40: Non-aligned pointer being freed (2)
*** set a breakpoint in malloc_error_break to debug
SIGBUS: bus error
7) Message boards : RALPH@home bug list : minirosetta v1.46 bug thread (Message 4412)
Posted 14 Dec 2008 by ramostol
Post:
So, either the guideline should change, or the tasks should change.


I suggest a look at the guidelines. In my Rosetta experience some current errors like to appear only after at least 3-4 hours of computing, which makes testing on Ralph with a default runtime of 1 hour somewhat questionable.


8) Message boards : RALPH@home bug list : minirosetta v1.45 bug thread (Message 4397)
Posted 7 Dec 2008 by ramostol
Post:
Sorry for the double posting. I was too careless with the preview function...
9) Message boards : RALPH@home bug list : minirosetta v1.45 bug thread (Message 4396)
Posted 7 Dec 2008 by ramostol
Post:
Suddenly received a lot of wus as second cruncher. Most of them succeeded, but these two errored out:

Task ID 1219133
(the first cruncher got a compute error)

Name ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1
Workunit 1075263

Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)

CPU time 3287.45

stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
WARNING! cannot write gzipped stream to file ../../projects/ralph.bakerlab.org/ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1_0
======================================================
DONE :: 1 starting structures 3286.76 cpu seconds
This process generated 4 decoys from 4 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 20.9957354429277
Granted credit 0
application version 1.45

-------------------

Task ID 1219112
(the first cruncher also got a compute error)

Task ID 1219112
Name ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t317__mtyka_IGNORE_THE_REST_2ESBA_11_5963_2_1
Workunit 1074442

Server state Over
Outcome Client error
Client state Compute error
Exit status 193 (0xc1)

CPU time 1727.848
stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
SIGBUS: bus error

Crashed executable name: minirosetta_1.45_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.5 build 9F33
Sat Dec 6 21:18:39 2008

sh: /usr/bin/atos: No such file or directory
0 0x0064c07b SIGPIPE: write on a pipe with no reader
1 0x0051feba SIGPIPE: write on a pipe with no reader
2 0x9393009b SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0001596f SIGPIPE: write on a pipe with no reader
5 0x000830f3 SIGPIPE: write on a pipe with no reader
6 0x000fa4e2 SIGPIPE: write on a pipe with no reader
7 0x001938b1 SIGPIPE: write on a pipe with no reader
8 0x001afe27 SIGPIPE: write on a pipe with no reader
9 0x001b5381 SIGPIPE: write on a pipe with no reader
10 0x00009a87 SIGPIPE: write on a pipe with no reader
11 0x0000292e SIGPIPE: write on a pipe with no reader
12 0x00002855
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x938f7e62 ecx: 0xbfffaa5c edx: 0x938c34a6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffaa98 esp: 0xbfffaa5c
ss: 0x0000001f efl: 0x00000206 eip: 0x938c34a6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

Binary Images Description:
[[etc etc]]


Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 11.0351304182852
Granted credit 0
application version 1.45
10) Message boards : RALPH@home bug list : minirosetta v1.45 bug thread (Message 4395)
Posted 7 Dec 2008 by ramostol
Post:
Suddenly received a lot of wus as second cruncher. Most of them succeeded, but these two errored out:

Task ID 1219133
(the first cruncher got a compute error)

Name ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1
Workunit 1075263

Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)

CPU time 3287.45

stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
WARNING! cannot write gzipped stream to file ../../projects/ralph.bakerlab.org/ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1_0
======================================================
DONE :: 1 starting structures 3286.76 cpu seconds
This process generated 4 decoys from 4 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 20.9957354429277
Granted credit 0
application version 1.45

-------------------

Task ID 1219112
(the first cruncher also got a compute error)

Task ID 1219112
Name ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t317__mtyka_IGNORE_THE_REST_2ESBA_11_5963_2_1
Workunit 1074442

Server state Over
Outcome Client error
Client state Compute error
Exit status 193 (0xc1)

CPU time 1727.848
stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
SIGBUS: bus error

Crashed executable name: minirosetta_1.45_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.5 build 9F33
Sat Dec 6 21:18:39 2008

sh: /usr/bin/atos: No such file or directory
0 0x0064c07b SIGPIPE: write on a pipe with no reader
1 0x0051feba SIGPIPE: write on a pipe with no reader
2 0x9393009b SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0001596f SIGPIPE: write on a pipe with no reader
5 0x000830f3 SIGPIPE: write on a pipe with no reader
6 0x000fa4e2 SIGPIPE: write on a pipe with no reader
7 0x001938b1 SIGPIPE: write on a pipe with no reader
8 0x001afe27 SIGPIPE: write on a pipe with no reader
9 0x001b5381 SIGPIPE: write on a pipe with no reader
10 0x00009a87 SIGPIPE: write on a pipe with no reader
11 0x0000292e SIGPIPE: write on a pipe with no reader
12 0x00002855
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x938f7e62 ecx: 0xbfffaa5c edx: 0x938c34a6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffaa98 esp: 0xbfffaa5c
ss: 0x0000001f efl: 0x00000206 eip: 0x938c34a6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

Binary Images Description:
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0x3e000000 - 0x3e045fff /System/Library/Frameworks/GLUT.framework/Versions/A/GLUT
0x900c1000 - 0x9028ffff /System/Library/Frameworks/Security.framework/Versions/A/Security
0x90290000 - 0x90342fff /usr/lib/libcrypto.0.9.7.dylib
0x90343000 - 0x90347fff /usr/lib/system/libmathCommon.A.dylib
0x90348000 - 0x9037ffff /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x90380000 - 0x90413fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x90414000 - 0x90453fff /System/Library/PrivateFrameworks/CoreMediaIOServicesPrivate.framework/Versions/A/CoreMediaIOServicesPrivate
0x90454000 - 0x904dbfff /usr/lib/libsqlite3.0.dylib
0x904dc000 - 0x90539fff /usr/lib/libstdc++.6.dylib
0x9056d000 - 0x90579fff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x9057a000 - 0x9065ffff /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x90660000 - 0x90667fff /usr/lib/libgcc_s.1.dylib
0x90668000 - 0x90686fff /usr/lib/libresolv.9.dylib
0x906d7000 - 0x90791fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x90792000 - 0x907a2fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x907a3000 - 0x90a1efff /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x90a1f000 - 0x90a5dfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x90a6b000 - 0x90a73fff /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x90bf4000 - 0x913f1fff /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x913f2000 - 0x91434fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0x91435000 - 0x91459fff /usr/lib/libxslt.1.dylib
0x9145a000 - 0x91460fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
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0x91622000 - 0x9162bfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x9162c000 - 0x91764fff /usr/lib/libicucore.A.dylib
0x92983000 - 0x929fffff /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x92a00000 - 0x92dbefff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x92dfa000 - 0x92e10fff /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x92e14000 - 0x92e21fff /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x92ebe000 - 0x92ebefff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x92ebf000 - 0x92f3efff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x92f3f000 - 0x93020fff /usr/lib/libxml2.2.dylib
0x93280000 - 0x9330bfff /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x9330c000 - 0x9330cfff /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x9330d000 - 0x93335fff /usr/lib/libcups.2.dylib
0x93336000 - 0x93339fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x9333a000 - 0x93344fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x934d9000 - 0x934dbfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x934dc000 - 0x93536fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x935f9000 - 0x93600fff /usr/lib/libbsm.dylib
0x93601000 - 0x93603fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
0x9363a000 - 0x936e8fff /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit
0x936e9000 - 0x9376dfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x9376e000 - 0x937fafff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x937fb000 - 0x9384bfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x9384c000 - 0x93864fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x93865000 - 0x938c1fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering
0x938c2000 - 0x93a22fff /usr/lib/libSystem.B.dylib
0x93a23000 - 0x93aa0fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x93aa1000 - 0x93eb1fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x93eef000 - 0x93f69fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x93f6a000 - 0x93f89fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x94280000 - 0x942affff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
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0x943e0000 - 0x94702fff /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime
0x94703000 - 0x94703fff /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x947b0000 - 0x947b0fff /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x9487b000 - 0x94d4cfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x94d53000 - 0x953effff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x953f0000 - 0x9541afff /System/Library/PrivateFrameworks/CoreMediaPrivate.framework/Versions/A/CoreMediaPrivate
0x9548e000 - 0x95518fff /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x95519000 - 0x95527fff /usr/lib/libz.1.dylib
0x95528000 - 0x95528fff /System/Library/PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer
0x95541000 - 0x95551fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x95552000 - 0x95556fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x9556f000 - 0x9556ffff /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x9557c000 - 0x955b6fff /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
0x955b7000 - 0x958befff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x958cf000 - 0x958e5fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x958e6000 - 0x958e7fff /usr/lib/libffi.dylib
0x958e8000 - 0x9598ffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x959e0000 - 0x95a0dfff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x95b18000 - 0x95bc8fff /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x96227000 - 0x96252fff /usr/lib/libauto.dylib
0x962a3000 - 0x963d5fff /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x96449000 - 0x9658ffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x96590000 - 0x96590fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x96591000 - 0x96671fff /usr/lib/libobjc.A.dylib
0x96673000 - 0x96706fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x9673e000 - 0x9677dfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x9677e000 - 0x9677efff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x9677f000 - 0x9677ffff /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x96780000 - 0x96847fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x96848000 - 0x96be5fff /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x96be6000 - 0x96c3ffff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x96c43000 - 0x96c57fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x96c6c000 - 0x96c87fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x96c88000 - 0x96c8dfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x96c8e000 - 0x96f68fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x96f69000 - 0x9708dfff /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox


Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 11.0351304182852
Granted credit 0
application version 1.45
11) Message boards : Number crunching : platform x86_64-apple-darwin not found (Message 4261)
Posted 11 Oct 2008 by ramostol
Post:
I second.

The Rosetta main project works perfectly on my trial MacBook Intel, but the computer receives no Ralph wus from the present queue of tasks, the message in the title being the sole explanation.
12) Message boards : RALPH@home bug list : Rosetta mini 1.07 (Message 3784)
Posted 22 Feb 2008 by ramostol
Post:


I am in no position (and totally unqualified) to check this out, but if this were to happen on my Mac my first question would be: What is the behavior of the kernel_task process? (See <a href="http://ralph.bakerlab.org//forum_thread.php?id=326&nowrap=true#3338">this message</a>.)


Can you put that in English for the technically challenged among us (/me points to self)?

My reaction to the whole thread 326 is, that it contains very confusing combination of posts, especialy these concerning kenel_task process and these from Anonymous. Maybe the only relevant think I'd agree with was what anders_n suggested.



In these matters *I* am the technically challenged with 6 hours computer instruction a generation ago. And I am sorry if my posts appear confusing.

However, if I discover a Rosetta process continuously running without (seemingly) using any CPU time I list the active processes on my Mac using the Activities Manager, one item being a Rosetta process using no CPU. The process always at the bottom of the list is "kernel_task", usually occupying around 0.5-2 % CPU time. If it consistently uses 30-40 % I know it is not behaving quite normally. Then I go through the rest of the processes looking for a program using more CPU than appropriate (because it should not be processing anything at the time). I always find such a program, and restarting this program shrinks the CPU usage of kernel_task and normalise the CPU usage of the Rosetta process.

I cannot explain the matter, but at least the method works in my situation.
13) Message boards : RALPH@home bug list : Rosetta mini 1.07 (Message 3766)
Posted 20 Feb 2008 by ramostol
Post:
I had noticed a few days ago that an Einstein and a Rosetta Mini task were running together. Both were listed as running, but only the Rosetta task was accruing CPU time. Top confirmed that the E@H task wasn't getting any CPU time. Stopping/starting the daemon got things running properly again and I didn't think anything else of it.

I saw the same thing again this evening. I took some screen shots before and after restarting the daemon.



Happened again.

It's only happening with Einstein. Other projects are running fine with Rosetta Mini.


I am in no position (and totally unqualified) to check this out, but if this were to happen on my Mac my first question would be: What is the behavior of the kernel_task process? (See <a href="http://ralph.bakerlab.org//forum_thread.php?id=326&nowrap=true#3338">this message</a>.)
14) Message boards : Current tests : Help us debug minirosetta. (Message 3738)
Posted 14 Feb 2008 by ramostol
Post:
I put "Failures last 24h" on ralph. It can be client errors, invalid results, unsent results etc, i.e. everything else with a complete status. I am hesitant to add this to R@h. I'd rather point out the positive than negative for the good of the project. I wonder what other users think.


I have learned my lesson: in Ralph/Rosetta a success is not always a success, and a failure is not always a failure. My native language is not English, but I should think that your "failures" are much more than I personally define as such. Would another word - like noncompletions or whatever - suit everybody's purpose better?
15) Message boards : RALPH@home bug list : Bug reports for version 5.93 (Message 3652)
Posted 20 Jan 2008 by ramostol
Post:
You probably know this now, but anyhow:

(Some?) trunc_solit-wus seem unable to create proper output files.

3 invalid results for trunc_solit_BOINC_ABRELAX_-trunc_solit-_2934_25
16) Message boards : RALPH@home bug list : Bug reports for 5.90/5.91 (Message 3580)
Posted 27 Dec 2007 by ramostol
Post:
Another post I read in Rosetta said that there is a rule that will stop the Rosetta WU once it has run for 6 times its preference time, I have yet to verify this rule or prove it works.


Actually 4 times its preference time. Observed and proven.
17) Message boards : RALPH@home bug list : Bug reports for 5.84 (Message 3493)
Posted 2 Dec 2007 by ramostol
Post:
A non-fatal issue, and a general one I expect, but this time concerning a 5.85 task.

The watchdog report to Bakerlab shows no problems at all:

http://ralph.bakerlab.org/result.php?resultid=679198:

1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0

stderr out
<core_client_version>5.10.30</core_client_version>
<![CDATA[
<stderr_txt>
Rosetta@home Macintosh Stack Size checker.
Original size: 0.
Maximum size: 8388608.
RLIM_INFINITY 0
# cpu_run_time_pref: 14400
# random seed: 1808482
Rosetta@home Macintosh Stack Size checker.
Original size: 0.
Maximum size: 8388608.
RLIM_INFINITY 0
# cpu_run_time_pref: 14400
======================================================
DONE :: 1 starting structures 13106.9 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
]]>

From local message file:

30-Nov-2007 21:53:43 [ralph@home] Computation for task 1bk2__BOINC_ABINITIO_VFSCORE25-7-_SKIP3-1bk2_-vf__2623_3_0 finished
30-Nov-2007 21:53:43 [ralph@home] Starting 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0
30-Nov-2007 21:53:44 [ralph@home] Starting task 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0 using rosetta_beta version 585
01-Dec-2007 00:55:27 [ralph@home] Restarting task 1bgf__BOINC_ABINITIO_VFSCORE25-13-_SKIP3-1bgf_-vf__2629_2_0 using rosetta_beta version 585

The message file confirms that this wu has been restarted. No explanation is given, and the computer was running unattended with no disturbing network connections at the time, so I have no more leads.

And I was kind of expecting the watchdog to report 7 decoys from 8 attempts after this restart.
18) Message boards : RALPH@home bug list : Bug reports for 5.78 (Message 3357)
Posted 8 Sep 2007 by ramostol
Post:
Same error -161 after this wu.

Computing seems to complete normally, but Boinc/Rosetta finds no result file.
19) Message boards : RALPH@home bug list : Bug reports for rosetta_beta_5.77 and rosetta_5.69 (Message 3338)
Posted 30 Aug 2007 by ramostol
Post:
I commented on a similar problem in a Rosetta message board some time ago (39305). My experience is that if a Boinc project is running using no CPU (more correctly: using so little CPU time that it is practically unnoticeable), it happens because other programs hog the CPU in such a way that the Rosetta crunching is performed not in the Rosetta process but in the kernel_task process.

To bring the situation back to normal you may examine the active processes on you computer. If you observe a quite active kernel_task process this would confirm the theory. Then look through all processes to find a program/process using lots of CPU although doing nothing sensible, and quit this program. Then you can see kernel_task shrinking and the Rosetta process using CPU as normally.

What I did not mention in my original message is that this is probably also the cause of the occasionally reported problem of Rosetta processes running for days and days without being able to stop. Since Boinc/Rosetta will register the CPU use of the Rosetta process to determine when to terminate the process in accordance with your default settings, it will know nothing of the computing going on inside the kernel_task process and will let the process continue for a looooong time.
20) Message boards : RALPH@home bug list : Bug reports for 5.71 (Message 3268)
Posted 7 Jul 2007 by ramostol
Post:
I have alot of - exit code -1073741819 (0xc0000005)
with this kind of wu-s

Anders n


Problems confirmed with this series of wus on Mac:

2ffm_1_NMRREF_1_1pqx_1_idid_model_04IGNORE_THE_REST_idl_2218_10_0



2ffm_3_NMRREF_3_1pqx_1_idid_model_01IGNORE_THE_REST_idl_2218_10_0


Crashed after 6-8 min., could not complete model 1 step 0, thread 2 crashing.

Exit status
-177 (0xffffffffffffff4f)

<message>
Maximum disk usage exceeded
</message>
[[Boinc is allowed 20 Gb disk space]]



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