Posts by Paul D. Buck

1) Message boards : Feedback : Joining A Team - Unable (Message 5124)
Posted 22 Apr 2010 by Profile Paul D. Buck
Post:
I don't even get a join link for SETI.USA ...

I do get a link for BOINC Synergy, but, don't want to re-join that team and then not be able to quit ...
2) Message boards : RALPH@home bug list : minirosetta_1.72 (Message 4842)
Posted 17 Jun 2009 by Profile Paul D. Buck
Post:
I know I am behind the times ... sorry ...

1470527 (-161)
1472776 Validate Error
3) Message boards : RALPH@home bug list : minirosetta_1.72 (Message 4830)
Posted 4 Jun 2009 by Profile Paul D. Buck
Post:
its 1.71: http://ralph.bakerlab.org/result.php?resultid=1470527, but, nowhere else to post it ... -161 error ...
4) Message boards : RALPH@home bug list : minirosetta_1.70 (Message 4826)
Posted 20 May 2009 by Profile Paul D. Buck
Post:
Validate Error 99 decoys in 827 seconds ... maybe a new world record ...

Task Name: gen2_seqrelax_200_frag_cst_notmpfrag_hb_t367__IGNORE_THE_REST_1UFBA_6_10095_1_1
5) Message boards : RALPH@home bug list : minirosetta_1.64 (Message 4810)
Posted 2 May 2009 by Profile Paul D. Buck
Post:
Have Rosetta@home and Ralph@home switched roles in which of them tests new versions of applications first? I've already received several minirosetta 1.65 workunits from Rosetta@home, without seeing any sign that there have been any Ralph@home tests of that version at all.

INteresting... me too ... I wonder if they just screwed the version number where 1.65 is 1.64 with a new dress ...
6) Message boards : RALPH@home bug list : minirosetta_1.64 (Message 4804)
Posted 29 Apr 2009 by Profile Paul D. Buck
Post:
Segpipe errors on 3 tasks:

SIGSEGV: segmentation violation

Crashed executable name: minirosetta_1.64_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.6 build 9G55
Tue Apr 28 18:55:15 2009

sh: /usr/bin/atos: No such file or directory
0 0x006b149b SIGPIPE: write on a pipe with no reader
1 0x0048754e SIGPIPE: write on a pipe with no reader
2 0x0215d2bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0017555a SIGPIPE: write on a pipe with no reader
5 0x0018b2ed SIGPIPE: write on a pipe with no reader
6 0x00517aae SIGPIPE: write on a pipe with no reader
7 0x004fce90 SIGPIPE: write on a pipe with no reader
8 0x00b4494b SIGPIPE: write on a pipe with no reader
9 0x00120021 SIGPIPE: write on a pipe with no reader
10 0x000048fd SIGPIPE: write on a pipe with no reader
11 0x000026ae SIGPIPE: write on a pipe with no reader
12 0x000025d5 SIGPIPE: write on a pipe with no reader
13 0x00000019
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x02125802 ecx: 0xbfffb8cc edx: 0x020f11c6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffb908 esp: 0xbfffb8cc
ss: 0x0000001f efl: 0x00000206 eip: 0x020f11c6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

1431298
1431297
1431275
7) Message boards : RALPH@home bug list : Minirosetta 1.61 (Message 4784)
Posted 16 Apr 2009 by Profile Paul D. Buck
Post:
On OS-X I am getting:

sh: /usr/bin/atos: No such file or directory
0 0x0067c69d SIGPIPE: write on a pipe with no reader
1 0x0045e59a SIGPIPE: write on a pipe with no reader
2 0x01fd52bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x00989832 SIGPIPE: write on a pipe with no reader
5 0x0098a1aa SIGPIPE: write on a pipe with no reader
6 0x00189868 SIGPIPE: write on a pipe with no reader
7 0x003285bb SIGPIPE: write on a pipe with no reader
8 0x00564535 SIGPIPE: write on a pipe with no reader
9 0x00563fd9 SIGPIPE: write on a pipe with no reader
10 0x0056fa42 SIGPIPE: write on a pipe with no reader
11 0x00120d0b SIGPIPE: write on a pipe with no reader
12 0x001335a7 SIGPIPE: write on a pipe with no reader
13 0x00003bbb SIGPIPE: write on a pipe with no reader
14 0x00001eee SIGPIPE: write on a pipe with no reader
15 0x00001e15

1424721
1424742
1424743
1424747


On XP Pro 32-Bit

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00611ED9 write attempt to address 0x00000000

1424865

It is probably the same problem but seen differently by the two OS ...
8) Message boards : RALPH@home bug list : Minirosetta 1.61 (Message 4780)
Posted 16 Apr 2009 by Profile Paul D. Buck
Post:
Hi everyone,

Here's the new bug thread for 1.60 (1.59 had a quirk).

THis one has largerly new code in it but not a lot of bugfixes - I hope it's as stable as the last one, that's what we need to find out.

Thanks for all your bugreports!

Mike


So do we kill the 1.59 tasks?
9) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4770)
Posted 9 Apr 2009 by Profile Paul D. Buck
Post:
This task seemed to have hung, tried graphics on it and got a black window. The window would not close so got a GPF for my troubles. The task seems to have "hung" after that and went into high priority mode and no advance on the percentage complete so I shot it.
10) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4769)
Posted 8 Apr 2009 by Profile Paul D. Buck
Post:
I agree. On the 10th of March I asked when it was going over to the main project, I'm yet to get a answer

They haven't said anything about the bad tasks in like forever also ...
11) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4767)
Posted 7 Apr 2009 by Profile Paul D. Buck
Post:
Seven days and no bad tasks? I know we don't get that many total ... but ... isn't about time to promote 1.58 to operational while we chase these last buglets?

I know 1.54 is decent, but, 1.58 is marginally better in stability ...

What about it guys?
12) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4762)
Posted 28 Mar 2009 by Profile Paul D. Buck
Post:
Several incidents of the error reported by svincent below,

ERROR: ERROR: FragmentIO: could not open file aa9mer.1_3.gz
ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 245

Task IDs:
1378040
1378221
1384682
1379800

I noted on at least two of them that the other wingman also had the task fail ... configuration issue?

Another error in this latest batch is:

ERROR: aFrame->nr_frags()
ERROR:: Exit from: ....srccorefragmentFragSet.cc line: 168

Task ID: 1376838

The only good news I suppose is that the failures happen almost right away...
13) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4754)
Posted 24 Mar 2009 by Profile Paul D. Buck
Post:
New error:
ERROR: aFrame->nr_frags()
ERROR:: Exit from: ....srccorefragmentFragSet.cc line: 168
14) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4753)
Posted 23 Mar 2009 by Profile Paul D. Buck
Post:
Robert,

Thanks for all the work on the lock file ... I hope we can figure out what is going on with this ...

On my part I have a Validate error though the task seems to have failed with another error that did not get reported as an error:

ERROR: dis==0 in pairtermderiv!
ERROR:: Exit from: src/core/scoring/methods/PairEnergy.cc line: 338

What does this mean? Beats me ...
15) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4737)
Posted 16 Mar 2009 by Profile Paul D. Buck
Post:
First death in like forever ... I have run off a ton of tasks recently and only the one death:

1362077 0x006C43DD write attempt to address 0x00000000

Pretty sure this is an address reported previously ...
16) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4723)
Posted 6 Mar 2009 by Profile Paul D. Buck
Post:
The error is: "Unable to open weights."

1331227
1331235
17) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4719)
Posted 3 Mar 2009 by Profile Paul D. Buck
Post:
It looks like three tasks with the same error... and it is not one I have seen before:

ERROR: ( vol_a.length() == 2 ) && ( std::isalpha( vol_a[ 0 ] ) ) && ( vol_a[ 1 ] == ':' )
ERROR:: Exit from: ....srcutilityfileFileName.cc line: 41
BOINC:: Error reading and gzipping output datafile: default.out

1325665
1325692
1325691
18) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4711)
Posted 19 Feb 2009 by Profile Paul D. Buck
Post:
These messages are repeated many times.

I'm now running at 95% CPU, in order to help pin down the cause of this problem.


The one hint is that POSSIBLY only those tasks where you have the screen saver activate or use the graphics application ALONG with CPU throtteling may be linked ... can you make note of that?
19) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4708)
Posted 19 Feb 2009 by Profile Paul D. Buck
Post:
At least we got a little work again ...
20) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4703)
Posted 14 Feb 2009 by Profile Paul D. Buck
Post:
I don't know if it's significant that I only saw this problem after enabling the graphics for a few minutes, even though I normally keep it disabled. The graphics looked reasonable, though.


Ha! There may be the clue I was missing!

I don't recall if I had been looking at the graphics or not. But it is likely when I saw a failure. Until I gave up in disgust.

Though there are no tasks perhaps the test would be to run a few tasks with no looking and some where you look at the graphics.

I am not sure why the launching of the graphics application would cause this issue but this could be the missing clue ... and why I never saw the issue in Einstein even when I had the setting that caused this issue in Rosetta ...

MOST interesting is that you can launch graphics at 100% and have no issue. But, that the switch to pause the application would cause it.

Oh, and if you don't want to lose that much CPU you can use 99% like I did and get the same effect ...


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