Posts by BigMike

1) Message boards : RALPH@home bug list : Minirosetta Beta 3.14 (Message 5328)
Posted 15 Jun 2011 by BigMike
Post:
Had one blow up on a sin/cos range error.

=Mike
2) Message boards : RALPH@home bug list : Minirosetta 2.14 (Message 5178)
Posted 8 Sep 2010 by BigMike
Post:
I also got a weights error and a filexfer error on SAXS WU's.

=Mike
3) Message boards : RALPH@home bug list : Minirosetta 2.14 (Message 5176)
Posted 7 Sep 2010 by BigMike
Post:
Post deleted due to my lack of research before opening my mouth.

=Mike
4) Message boards : RALPH@home bug list : Minirosetta 2.11 (Message 5130)
Posted 25 Apr 2010 by BigMike
Post:
Same here

==Mike
5) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4979)
Posted 30 Sep 2009 by BigMike
Post:
Same here.
Nasty looking out-of-bounds error; lots of debug output.

==Mike
6) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4941)
Posted 28 Aug 2009 by BigMike
Post:
This one only ran for a few seconds:

Incorrect function. (0x1) - exit code 1 (0x1)

ERROR: ERROR: Unable to open silent_input file: 'default.out'
ERROR:: Exit from: ....srccoreiosilentSilentFileData.cc line: 96
BOINC:: Error reading and gzipping output datafile: default.out

==Mike
7) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4734)
Posted 15 Mar 2009 by BigMike
Post:
I have had a good number of ghost work units reportedly downloaded to me but I can't find them.

Same here. I have about 40 WU's that R@H thinks are "in progress", but I never saw them.


It just did it to me again. Three WU's completed...37 non-existent ones "in progress". And I've reached my daily "quota".

==Mike
8) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4729)
Posted 15 Mar 2009 by BigMike
Post:
I have had a good number of ghost work units reportedly downloaded to me but I can't find them.

Same here. I have about 40 WU's that R@H thinks are "in progress", but I never saw them. Something's broken...

==Mike
9) Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.39 (Message 4318)
Posted 29 Oct 2008 by BigMike
Post:
Had two interesting failures

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
recovering checkpoint of tag S_1C4OA_17_00000001 with id abrelax_rg_state


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x008106CA read attempt to address 0x00000000

This is followed by a lot of debug info

==Mike
10) Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.39 (Message 4308)
Posted 27 Oct 2008 by BigMike
Post:
This one failed almost immediately:

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<stderr_txt>
======================================================
DONE :: 1 starting structures 1.15625 cpu seconds
This process generated 0 decoys from 0 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>1spb_ems.mrtm.pdb.gz__3_8_5227_10_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

==Mike
11) Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.36 (Message 4265)
Posted 12 Oct 2008 by BigMike
Post:
ERROR: NANs occured in hbonding!


I've had quite a few more of these:
1120465 1125654 1125657 1125717 1125913

==Mike
12) Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.36 (Message 4264)
Posted 11 Oct 2008 by BigMike
Post:
This one died almost immediately:

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 763
called boinc_finish

</stderr_txt>
]]>

==Mike
13) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4217)
Posted 26 Sep 2008 by BigMike
Post:
Interesting, it looks like this one finished and then restarted itself:

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
======================================================
DONE :: 1 starting structures 3521.69 cpu seconds
This process generated 19 decoys from 19 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish
======================================================
DONE :: 1 starting structures 2546.2 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

==Mike
14) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4216)
Posted 26 Sep 2008 by BigMike
Post:
Sorry, but I just spotted these failures:

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
WARNING: Override of option -out:file:silent sets a different value
WARNING: Override of option -out:file:silent sets a different value

ERROR: Cannot open file workmtykarunhomo_bench\targetst286_starting_models_nonideal1VJGA_3.pdb
ERROR:: Exit from: ....srccoreiopdbpose_io.cc line: 161
called boinc_finish

</stderr_txt>
]]>

**********

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
ERROR:: Unable to determine sequence length from pdb file
ERROR:: Exit from: .pose.cc line: 2013

</stderr_txt>
]]>

==Mike

15) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4204)
Posted 22 Sep 2008 by BigMike
Post:
I got the same warning, but it finished normally:

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
WARNING: Override of option -out:file:silent sets a different value
WARNING: Override of option -out:file:silent sets a different value
======================================================
DONE :: 1 starting structures 3817.05 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

==Mike
16) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4201)
Posted 11 Sep 2008 by BigMike
Post:
This didn't cause a failure, but it was unusual:

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
needs psipred_ss2 to run filters
needs psipred_ss2 to run filters
needs psipred_ss2 to run filters
needs psipred_ss2 to run filters
needs psipred_ss2 to run filters
needs psipred_ss2 to run filters
======================================================
DONE :: 1 starting structures 3254.23 cpu seconds
This process generated 3 decoys from 3 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

==Mike
17) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4078)
Posted 27 May 2008 by BigMike
Post:
Just had another one fail, this time on disk write errors.

The message in the log is:
5/26/2008 11:43:30 PM|ralph@home|Aborting task t393_lr_CASP8_round2_centroid_aaT0393_2I76A_10_0002_4059_2_0: exceeded disk limit: 97.71MB > 95.37MB

But this doesn't make any sense. My free space is 33GB, and all my BOINC preferences are set in the 100GB range. 95.37MB is a garbage number.

==Mike
18) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4077)
Posted 27 May 2008 by BigMike
Post:
Unfortunately, my first 1.26 WU failed.

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: ....srccoreiopdbpose_io.cc line: 157
called boinc_finish

</stderr_txt>
]]>

==Mike
19) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4007)
Posted 8 May 2008 by BigMike
Post:
This one failed in a matter of seconds. It seems a little different from the others mentioned.

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
ERROR:: Exit from: ....srcprotocolsabinitioAbrelaxApplication.cc line: 363
called boinc_finish

</stderr_txt>
]]>

==Mike
20) Message boards : RALPH@home bug list : minirosetta 1.15 bug thread (Message 3973)
Posted 26 Apr 2008 by BigMike
Post:
I got the same thing as Dr Who Fan:

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -score:smooth_etables not found in command line top-level context

</stderr_txt>
]]>

==Mike


Next 20



©2022 University of Washington
http://www.bakerlab.org