Task 3998912
| Name | ab_12_01__vall_2011_1rnbA_vall_2011_9mers_3mers_20564_136_0 |
| Workunit | 3521519 |
| Created | 27 Jan 2017, 4:14:42 UTC |
| Sent | 1 Feb 2017, 9:02:22 UTC |
| Report deadline | 3 Feb 2017, 9:02:22 UTC |
| Received | 1 Feb 2017, 11:29:53 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 11 (0x0000000B) Unknown error code |
| Computer ID | 38989 |
| Run time | |
| CPU time | 1 hours 7 min 12 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 0.00 GFLOPS |
| Application version | --- |
Stderr output
<core_client_version>7.4.53</core_client_version> <![CDATA[ <message> process got signal 11 </message> <stderr_txt> k Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:35:54:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:35:54:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:37: 2:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:37: 2:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:38:12:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:38:12:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:39:25:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:39:25:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:40:29:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:40:29:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:41:42:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:41:42:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:42:37:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:42:37:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:43:34:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:43:34:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:44:45:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:44:45:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:45:54:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:45:54:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:47: 5:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:47: 5:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:48: 9:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:48: 9:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:49:21:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:49:21:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:50:17:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:50:17:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:51:25:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:51:25:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:52:36:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:52:36:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:53:29:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:53:29:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:54:35:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:54:35:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:55:45:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:55:45:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:56:58:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:56:58:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:57:53:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:57:53:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 10:59: 5:] :: BOINC:: Initializing ... ok. [2017- 2- 1 10:59: 5:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 0:17:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 0:17:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 1: 9:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 1: 9:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 2: 4:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 2: 4:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 3: 6:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 3: 6:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 4:15:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 4:15:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 5:25:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 5:25:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 6:39:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 6:39:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 7:44:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 7:44:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11: 9:35:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11: 9:35:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11:10:41:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11:10:41:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11:12: 5:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11:12: 5:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11:13:17:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11:13:17:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11:14:11:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11:14:11:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip [2017- 2- 1 11:15:24:] :: BOINC:: Initializing ... ok. [2017- 2- 1 11:15:24:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.77_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1rnbA.pdb -in::file::fasta ab_12_01__vall_2011__1rnbA.fasta -psipred_ss2 ab_12_01__vall_2011__1rnbA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1rnbA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1rnbA.200.3mers.index -fragA ab_12_01__vall_2011__1rnbA.200.9mers.index -fragB ab_12_01__vall_2011__1rnbA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2704639 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_0cb8dc1_A.zip Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 ====================================================== DONE :: 1 starting structures 4031.71 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 2.18075e+08 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... 12:27:50 (25161): called boinc_finish(0) </stderr_txt> ]]>
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