Task 4041855

Name ab_12_01__vall_2011_1a68A_vall_2011_9mers_3mers_20564_290_0
Workunit 3557317
Created 28 Mar 2017, 0:43:34 UTC
Sent 28 Mar 2017, 3:56:24 UTC
Report deadline 30 Mar 2017, 3:56:24 UTC
Received 30 Mar 2017, 6:00:11 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 39292
Run time
CPU time 58 min 21 sec
Validate state Valid
Credit 6.23
Device peak FLOPS 0.00 GFLOPS
Application version ---

Stderr output

<core_client_version>7.4.53</core_client_version>
<![CDATA[
<stderr_txt>
[2017- 3-29 14:40:46:] :: BOINC:: Initializing ... ok.
[2017- 3-29 14:40:46:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_ac6fa1b.zip
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-29 17: 3:11:] :: BOINC:: Initializing ... ok.
[2017- 3-29 17: 3:11:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
[2017- 3-29 17: 9:47:] :: BOINC:: Initializing ... ok.
[2017- 3-29 17: 9:47:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
[2017- 3-29 18:26:54:] :: BOINC:: Initializing ... ok.
[2017- 3-29 18:26:54:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
[2017- 3-29 22:54:46:] :: BOINC:: Initializing ... ok.
[2017- 3-29 22:54:46:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
[2017- 3-29 23:42:15:] :: BOINC:: Initializing ... ok.
[2017- 3-29 23:42:15:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! 
[2017- 3-30  0:12:14:] :: BOINC:: Initializing ... ok.
[2017- 3-30  0:12:14:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! 
[2017- 3-30  0:40: 3:] :: BOINC:: Initializing ... ok.
[2017- 3-30  0:40: 3:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! 
[2017- 3-30  1:16:59:] :: BOINC:: Initializing ... ok.
[2017- 3-30  1:16:59:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! 
======================================================
DONE ::     1 starting structures  3501.62 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================
BOINC :: WS_max 0
BOINC :: BOINC support services shutting down cleanly ...
01:59:52 (18957): called boinc_finish(0)

</stderr_txt>
]]>




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