Task 4041855
| Name | ab_12_01__vall_2011_1a68A_vall_2011_9mers_3mers_20564_290_0 |
| Workunit | 3557317 |
| Created | 28 Mar 2017, 0:43:34 UTC |
| Sent | 28 Mar 2017, 3:56:24 UTC |
| Report deadline | 30 Mar 2017, 3:56:24 UTC |
| Received | 30 Mar 2017, 6:00:11 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 39292 |
| Run time | |
| CPU time | 58 min 21 sec |
| Validate state | Valid |
| Credit | 6.23 |
| Device peak FLOPS | 0.00 GFLOPS |
| Application version | --- |
Stderr output
<core_client_version>7.4.53</core_client_version> <![CDATA[ <stderr_txt> [2017- 3-29 14:40:46:] :: BOINC:: Initializing ... ok. [2017- 3-29 14:40:46:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_ac6fa1b.zip Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... [2017- 3-29 17: 3:11:] :: BOINC:: Initializing ... ok. [2017- 3-29 17: 3:11:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... [2017- 3-29 17: 9:47:] :: BOINC:: Initializing ... ok. [2017- 3-29 17: 9:47:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() [2017- 3-29 18:26:54:] :: BOINC:: Initializing ... ok. [2017- 3-29 18:26:54:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... [2017- 3-29 22:54:46:] :: BOINC:: Initializing ... ok. [2017- 3-29 22:54:46:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting work on structure: _00001 [2017- 3-29 23:42:15:] :: BOINC:: Initializing ... ok. [2017- 3-29 23:42:15:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! [2017- 3-30 0:12:14:] :: BOINC:: Initializing ... ok. [2017- 3-30 0:12:14:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! [2017- 3-30 0:40: 3:] :: BOINC:: Initializing ... ok. [2017- 3-30 0:40: 3:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! [2017- 3-30 1:16:59:] :: BOINC:: Initializing ... ok. [2017- 3-30 1:16:59:] :: BOINC :: boinc_init() BOINC:: Worker initialized successfully. Fixing ambiguous flag -use_filters to -abinitio::use_filters command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.79_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a68A.pdb -in::file::fasta ab_12_01__vall_2011__1a68A.fasta -psipred_ss2 ab_12_01__vall_2011__1a68A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a68A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a68A.200.3mers.index -fragA ab_12_01__vall_2011__1a68A.200.9mers.index -fragB ab_12_01__vall_2011__1a68A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706285 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! ====================================================== DONE :: 1 starting structures 3501.62 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 BOINC :: BOINC support services shutting down cleanly ... 01:59:52 (18957): called boinc_finish(0) </stderr_txt> ]]>
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