Task 4042340

Name ab_12_01__vall_2011_1a19A_vall_2011_9mers_3mers_20564_295_0
Workunit 3557725
Created 28 Mar 2017, 13:35:44 UTC
Sent 28 Mar 2017, 15:05:54 UTC
Report deadline 30 Mar 2017, 15:05:54 UTC
Received 31 Mar 2017, 0:21:37 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 39314
Run time
CPU time 3 hours 47 min 40 sec
Validate state Valid
Credit 64.58
Device peak FLOPS 0.00 GFLOPS
Application version ---

Stderr output

<core_client_version>7.4.53</core_client_version>
<![CDATA[
<stderr_txt>
d -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:13:51:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:13:51:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:16: 2:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:16: 2:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:18:14:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:18:14:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:20:26:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:20:26:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:22:37:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:22:37:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:24:49:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:24:49:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:27: 0:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:27: 0:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:29: 3:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:29: 3:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:30:46:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:30:46:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:32:30:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:32:30:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:34:13:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:34:13:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:35:57:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:35:57:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:37:41:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:37:41:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:39:52:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:39:52:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:42: 4:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:42: 4:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:44:15:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:44:16:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:46:27:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:46:27:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:48:38:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:48:38:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:50:50:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:50:50:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:53: 2:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:53: 2:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:55:14:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:55:14:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:57:25:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:57:25:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28  9:59:17:] :: BOINC:: Initializing ... ok.
[2017- 3-28  9:59:17:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10: 1:28:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10: 1:28:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10: 3:40:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10: 3:40:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10: 5:51:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10: 5:51:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10: 8: 3:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10: 8: 3:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10:10:15:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10:10:15:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10:12:26:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10:12:26:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10:14:24:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10:14:24:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10:16: 8:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10:16: 8:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-28 10:17:51:] :: BOINC:: Initializing ... ok.
[2017- 3-28 10:17:51:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:26:28:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:26:29:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:28:31:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:28:31:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:30:31:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:30:31:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:32:32:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:32:32:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:34:29:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:34:29:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:36: 2:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:36: 2:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:37:35:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:37:35:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:39: 7:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:39: 7:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
[2017- 3-30 12:40:26:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:40:26:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
# cpu_run_time_pref: 14400
[2017- 3-30 12:53:18:] :: BOINC:: Initializing ... ok.
[2017- 3-30 12:53:18:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! 
# cpu_run_time_pref: 14400
[2017- 3-30 13: 6:15:] :: BOINC:: Initializing ... ok.
[2017- 3-30 13: 6:15:] :: BOINC :: boinc_init()
BOINC:: Worker initialized successfully. 
Fixing ambiguous flag -use_filters to -abinitio::use_filters
command: ../../projects/ralph.bakerlab.org/minirosetta_android_3.81_arm-android-linux-gnu -abinitio::use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1a19A.pdb -in::file::fasta ab_12_01__vall_2011__1a19A.fasta -psipred_ss2 ab_12_01__vall_2011__1a19A.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1a19A.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1a19A.200.3mers.index -fragA ab_12_01__vall_2011__1a19A.200.9mers.index -fragB ab_12_01__vall_2011__1a19A.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2706380
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Using previously extracted minirosetta_database.
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ... 
BOINC:: Worker startup. 
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_Abrelax__rg_state ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! 
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! 
# cpu_run_time_pref: 14400
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
======================================================
DONE ::     1 starting structures  13660.2 cpu seconds
This process generated      7 decoys from       7 attempts
======================================================
BOINC :: WS_max 0
BOINC :: BOINC support services shutting down cleanly ...
16:32:01 (8823): called boinc_finish(0)

</stderr_txt>
]]>




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