Task 5456503

Name RF_SAVE_ALL_OUT_NOJRAN_IGNORE_THE_REST_validation_env_f_pred_71_16902_6_0
Workunit 4847052
Created 12 Jun 2024, 23:56:01 UTC
Sent 13 Jun 2024, 1:10:06 UTC
Report deadline 14 Jun 2024, 1:10:06 UTC
Received 27 Jun 2024, 7:59:28 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 0 (0x00000000)
Computer ID 49881
Run time 1 days 2 hours 2 min 15 sec
CPU time 19 min 1 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 1.00 GFLOPS
Application version Generalized biomolecular modeling and design with RoseTTAFold All-Atom v0.02 (nvidia_alpha)
windows_x86_64
Peak working set size 6,052.14 MB
Peak swap size 11,353.40 MB
Peak disk usage 9.04 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
Traceback (most recent call last):
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\predict.py", line 708, in <module>
    pred.predict(out_name+f'_{n}', 
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\predict.py", line 551, in predict
    logit_s, logit_aa_s, logit_pae, logit_pde, p_bind, pred_crds, alpha, pred_allatom, pred_lddt_binned,                msa_prev, pair_prev, state_prev = self.model(
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\ev0\lib\site-packages\torch\nn\modules\module.py", line 1051, in _call_impl
    return forward_call(*input, **kwargs)
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\RoseTTAFoldModel.py", line 358, in forward
    msa, pair, xyz, alpha_s, xyz_allatom, state, symmsub = self.simulator(
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\ev0\lib\site-packages\torch\nn\modules\module.py", line 1051, in _call_impl
    return forward_call(*input, **kwargs)
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\Track_module.py", line 1106, in forward
    msa, pair, xyz, state, alpha, symmsub = self.main_block[i_m](msa, pair,
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\ev0\lib\site-packages\torch\nn\modules\module.py", line 1051, in _call_impl
    return forward_call(*input, **kwargs)
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\Track_module.py", line 915, in forward
    rbf_feat = rbf(torch.cdist(cas, cas)) + self.pos(seq_unmasked, idx, bond_feats, dist_matrix, same_chain)
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\ev0\lib\site-packages\torch\nn\modules\module.py", line 1051, in _call_impl
    return forward_call(*input, **kwargs)
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\Track_module.py", line 45, in forward
    res_dist, atom_dist = get_res_atom_dist(idx, bond_feats, dist_matrix, sm_mask,
  File "C:\ProgramData\BOINC\projects\ralph.bakerlab.org\cv2\rf2aa\util_module.py", line 140, in get_res_atom_dist
    i_s, j_s = torch.where(bond_feats==6)
RuntimeError: CUDA error: out of memory
CUDA kernel errors might be asynchronously reported at some other API call,so the stacktrace below might be incorrect.
For debugging consider passing CUDA_LAUNCH_BLOCKING=1.
00:57:27 (14292): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>RF_SAVE_ALL_OUT_NOJRAN_IGNORE_THE_REST_validation_env_f_pred_71_16902_6_0_r273020680_0</file_name>
  <error_code>-240 (stat() failed)</error_code>
</file_xfer_error>
</message>
]]>




©2024 University of Washington
http://www.bakerlab.org