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Please post any bugs regarding version 5.78 here.
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Test post, hi all. Hope Rosetta is fixed soon!
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Test post, hi all. Hope Rosetta is fixed soon!
im here until rosetta is fixed |
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Hi all :)
How about some work on Ralph to take some load off Rosetta when !? it come
back to life;)
Anders n
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Hey everybody, thanks for the support!
This is a particularly crazy time because we are in the midst of the CAPRI competition to predict protein-protein interactions, and we\'d really like to run some workunits. There are two \"puzzles\" that we\'ve been given and they\'re both pretty cool, related to the interactions of some important signaling proteins (the so-called GTPases and the plexins).
We just got the ability to queue stuff to ralph so you\'ll start seeing some jobs. By the way, the first round that I sent out had a silly error (which I just fixed); sorry about that. Looking forward to getting ralph and rosetta running smoothly again!
Hi all :)
How about some work on Ralph to take some load off Rosetta when !? it come
back to life;)
Anders n
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We just got the ability to queue stuff to ralph so you\'ll start seeing some jobs. By the way, the first round that I sent out had a silly error (which I just fixed); sorry about that. Looking forward to getting ralph and rosetta running smoothly again!
Does the \"silly error\" have anything to do with this message:
WARNING! Not sure non-ideal rotamers are compatible with symmetry yet...
from 556979?
Snags |
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<error_code>-161</error_code>
On this Wu on a MAC
Anders n
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MAC again
\"Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -222.427 for 900 seconds\"
This Wu.
Anders n
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Result ID 628545
Name 1lfd__BOINC_NOUNBOUNDROT_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2285_19_0
Workunit 558397
Created 7 Sep 2007 3:58:41 UTC
Sent 7 Sep 2007 4:02:36 UTC
Received 7 Sep 2007 12:10:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 6493
Report deadline 11 Sep 2007 4:02:36 UTC
CPU time 25200.546606
stderr out <core_client_version>5.8.11</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 72000
# random seed: 2187839
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -221.51 for 900 seconds
**********************************************************************
GZIP SILENT FILE: .\\xx1lfd.out
</stderr_txt>
]]>
Validate state Valid
Claimed credit 54.9077026188714
Granted credit 61.1646064369449
application version 5.78 |
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All the latest WU\'s errored out,
629711 557911 7 Sep 2007 10:19:28 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 3,549.00 7.79 ---
629705 557826 7 Sep 2007 10:15:17 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 3,393.52 7.45 ---
629692 558751 7 Sep 2007 10:06:54 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 29.80 0.07 ---
629673 557766 7 Sep 2007 9:37:12 UTC 7 Sep 2007 10:53:31 UTC Over Client error Compute error 3,680.92 8.08 ---
629666 557998 7 Sep 2007 9:25:38 UTC 7 Sep 2007 12:59:48 UTC Over Client error Compute error 3,424.75 7.95
are these what you fixed for the \"silly error\" ? |
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Three errors:
Result 628787 after 3566 seconds:
<file_name>1lfd__BOINC_NOUNBOUNDROT_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2283_13_1_0</file_name>
<error_code>-161</error_code>
Result 628816 after 9 seconds:
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
# random seed: 2186800
ERROR:: Exit from: .\\loop_class.cc line: 138
</stderr_txt>
Result 628868 after 9 seconds:
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
# random seed: 2186798
ERROR:: Exit from: .\\loop_class.cc line: 138
</stderr_txt>
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MAC again
\"Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -222.427 for 900 seconds\"
This Wu.
Anders n
I´m holding Ralph wu-s for now on my MAC. They all end like above.
What do you want me to do?
Anders n
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Hi,
this WU failed on my PC (my result for this WU is this one).
WU was crunched on a 3,00 GHZ Xeon 2/ 1 GB RAM machine running on Win Server 2k3 R2 and BOINC Core 5.10.13
Below you may find trascripts of BOINC Manager\'s log.
Best regards
darkpella
07/09/2007 18.43.27|ralph@home|Computation for task t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 finished
07/09/2007 18.43.27|ralph@home|Output file t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1_0 for task t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 absent
07/09/2007 18.43.29|ralph@home|Deferring communication for 1 min 0 sec
07/09/2007 18.43.29|ralph@home|Reason: Unrecoverable error for result t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 (<file_xfer_error> <file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1_0</file_name> <error_code>-161</error_code></file_xfer_error>)
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/edit
oops, pressed send button twice!
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Error:
Result ID = 627997 / Workunit = 557886
<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 2188080
======================================================
DONE :: 1 starting structures 6897.8 cpu seconds
This process generated 20 decoys from 20 attempts
0 starting pdbs were skipped
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
</stderr_txt>
<message>
<file_xfer_error>
<file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_nodimerloop_plexinmonomer__2284_28_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>
</message>
]]>
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Error:
Result ID = 629993 / Workunit = 557909
<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 2187926
======================================================
DONE :: 1 starting structures 6897.77 cpu seconds
This process generated 21 decoys from 21 attempts
0 starting pdbs were skipped
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
</stderr_txt>
<message>
<file_xfer_error>
<file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-plexinmonomer__2284_32_2_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>
</message>
]]>
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Same error -161 after this wu.
Computing seems to complete normally, but Boinc/Rosetta finds no result file. |
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any news about rosetta?? |
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A compute error in this result.
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I\'ve gotten errors on the last 2 WU\'s:
This one on Sept 7 - http://ralph.bakerlab.org/result.php?resultid=630040
And this one just now (9th) - http://ralph.bakerlab.org/result.php?resultid=630305
Rosetta is running just fine on Beta 5.78.
This is a Pentium 4 running at 3.2 GHz, running XP SP2.
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This error
<core_client_version>5.8.16</core_client_version>
< |
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Another flavor of the -161 error:
<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 86400
# random seed: 2188376
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score 265.852 for 900 seconds
**********************************************************************
</stderr_txt>
<message>
<file_xfer_error>
<file_name>1lfd__BOINC_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2283_32_2_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>
</message>
]]>
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