Bug reports for 5.78

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Profile dekim
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Message 3341 - Posted: 5 Sep 2007, 21:47:28 UTC

Please post any bugs regarding version 5.78 here.
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Message 3342 - Posted: 6 Sep 2007, 12:18:14 UTC

Test post, hi all. Hope Rosetta is fixed soon!
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Message 3343 - Posted: 6 Sep 2007, 12:41:24 UTC - in response to Message 3342.  

Test post, hi all. Hope Rosetta is fixed soon!

im here until rosetta is fixed
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Message 3344 - Posted: 6 Sep 2007, 13:25:17 UTC

Hi all :)

How about some work on Ralph to take some load off Rosetta when !? it come
back to life;)

Anders n
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Message 3345 - Posted: 7 Sep 2007, 3:20:12 UTC - in response to Message 3344.  

Hey everybody, thanks for the support!

This is a particularly crazy time because we are in the midst of the CAPRI competition to predict protein-protein interactions, and we\'d really like to run some workunits. There are two \"puzzles\" that we\'ve been given and they\'re both pretty cool, related to the interactions of some important signaling proteins (the so-called GTPases and the plexins).

We just got the ability to queue stuff to ralph so you\'ll start seeing some jobs. By the way, the first round that I sent out had a silly error (which I just fixed); sorry about that. Looking forward to getting ralph and rosetta running smoothly again!

Hi all :)

How about some work on Ralph to take some load off Rosetta when !? it come
back to life;)

Anders n


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Message 3346 - Posted: 7 Sep 2007, 4:41:09 UTC - in response to Message 3345.  
Last modified: 7 Sep 2007, 4:42:31 UTC

We just got the ability to queue stuff to ralph so you\'ll start seeing some jobs. By the way, the first round that I sent out had a silly error (which I just fixed); sorry about that. Looking forward to getting ralph and rosetta running smoothly again!



Does the \"silly error\" have anything to do with this message:

WARNING! Not sure non-ideal rotamers are compatible with symmetry yet...

from 556979?

Snags
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Message 3347 - Posted: 7 Sep 2007, 7:58:43 UTC

<error_code>-161</error_code>
On this Wu on a MAC

Anders n
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Message 3348 - Posted: 7 Sep 2007, 10:42:38 UTC

MAC again

\"Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -222.427 for 900 seconds\"

This Wu.

Anders n

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Message 3349 - Posted: 7 Sep 2007, 13:19:31 UTC

Result ID 628545
Name 1lfd__BOINC_NOUNBOUNDROT_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2285_19_0
Workunit 558397
Created 7 Sep 2007 3:58:41 UTC
Sent 7 Sep 2007 4:02:36 UTC
Received 7 Sep 2007 12:10:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 6493
Report deadline 11 Sep 2007 4:02:36 UTC
CPU time 25200.546606
stderr out <core_client_version>5.8.11</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 72000
# random seed: 2187839
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -221.51 for 900 seconds
**********************************************************************
GZIP SILENT FILE: .\\xx1lfd.out

</stderr_txt>
]]>
Validate state Valid
Claimed credit 54.9077026188714
Granted credit 61.1646064369449
application version 5.78
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Viking69

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Message 3350 - Posted: 7 Sep 2007, 14:13:07 UTC

All the latest WU\'s errored out,

629711 557911 7 Sep 2007 10:19:28 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 3,549.00 7.79 ---
629705 557826 7 Sep 2007 10:15:17 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 3,393.52 7.45 ---
629692 558751 7 Sep 2007 10:06:54 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 29.80 0.07 ---
629673 557766 7 Sep 2007 9:37:12 UTC 7 Sep 2007 10:53:31 UTC Over Client error Compute error 3,680.92 8.08 ---
629666 557998 7 Sep 2007 9:25:38 UTC 7 Sep 2007 12:59:48 UTC Over Client error Compute error 3,424.75 7.95

are these what you fixed for the \"silly error\" ?
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Message 3351 - Posted: 7 Sep 2007, 15:53:47 UTC
Last modified: 7 Sep 2007, 15:54:51 UTC

Three errors:

Result 628787 after 3566 seconds:
<file_name>1lfd__BOINC_NOUNBOUNDROT_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2283_13_1_0</file_name>
<error_code>-161</error_code>


Result 628816 after 9 seconds:
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
# random seed: 2186800
ERROR:: Exit from: .\\loop_class.cc line: 138
</stderr_txt>


Result 628868 after 9 seconds:
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
# random seed: 2186798
ERROR:: Exit from: .\\loop_class.cc line: 138
</stderr_txt>

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Message 3352 - Posted: 7 Sep 2007, 16:10:26 UTC - in response to Message 3348.  

MAC again

\"Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -222.427 for 900 seconds\"

This Wu.

Anders n


I´m holding Ralph wu-s for now on my MAC. They all end like above.
What do you want me to do?
Anders n

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Message 3353 - Posted: 7 Sep 2007, 17:11:05 UTC
Last modified: 7 Sep 2007, 17:14:30 UTC

Hi,

this WU failed on my PC (my result for this WU is this one).

WU was crunched on a 3,00 GHZ Xeon 2/ 1 GB RAM machine running on Win Server 2k3 R2 and BOINC Core 5.10.13

Below you may find trascripts of BOINC Manager\'s log.

Best regards
darkpella



07/09/2007 18.43.27|ralph@home|Computation for task t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 finished
07/09/2007 18.43.27|ralph@home|Output file t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1_0 for task t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 absent
07/09/2007 18.43.29|ralph@home|Deferring communication for 1 min 0 sec
07/09/2007 18.43.29|ralph@home|Reason: Unrecoverable error for result t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 (<file_xfer_error> <file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1_0</file_name> <error_code>-161</error_code></file_xfer_error>)

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Message 3354 - Posted: 7 Sep 2007, 17:12:22 UTC
Last modified: 7 Sep 2007, 17:15:35 UTC

/edit

oops, pressed send button twice!
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Message 3355 - Posted: 7 Sep 2007, 21:03:54 UTC
Last modified: 7 Sep 2007, 21:04:24 UTC

Error:
Result ID = 627997 / Workunit = 557886

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 2188080
======================================================
DONE :: 1 starting structures 6897.8 cpu seconds
This process generated 20 decoys from 20 attempts
0 starting pdbs were skipped
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
<message>
<file_xfer_error>
<file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_nodimerloop_plexinmonomer__2284_28_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

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Message 3356 - Posted: 8 Sep 2007, 0:17:29 UTC

Error:
Result ID = 629993 / Workunit = 557909

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 2187926
======================================================
DONE :: 1 starting structures 6897.77 cpu seconds
This process generated 21 decoys from 21 attempts
0 starting pdbs were skipped
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
<message>
<file_xfer_error>
<file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-plexinmonomer__2284_32_2_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

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Message 3357 - Posted: 8 Sep 2007, 8:12:50 UTC

Same error -161 after this wu.

Computing seems to complete normally, but Boinc/Rosetta finds no result file.
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Message 3358 - Posted: 8 Sep 2007, 11:40:15 UTC

any news about rosetta??
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Message 3359 - Posted: 9 Sep 2007, 6:56:56 UTC

A compute error in this result.
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Message 3363 - Posted: 10 Sep 2007, 3:43:54 UTC - in response to Message 3341.  

I\'ve gotten errors on the last 2 WU\'s:
This one on Sept 7 - http://ralph.bakerlab.org/result.php?resultid=630040
And this one just now (9th) - http://ralph.bakerlab.org/result.php?resultid=630305

Rosetta is running just fine on Beta 5.78.

This is a Pentium 4 running at 3.2 GHz, running XP SP2.
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