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Profile dekim
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Message 3341 - Posted 5 Sep 2007 21:47:28 UTC

    Please post any bugs regarding version 5.78 here.
    ____________

    Profile feet1st

    Joined: Mar 7 06
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    Message 3342 - Posted 6 Sep 2007 12:18:14 UTC

      Test post, hi all. Hope Rosetta is fixed soon!
      ____________

      rochester new york

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      Message 3343 - Posted 6 Sep 2007 12:41:24 UTC - in response to Message 3342.

        Test post, hi all. Hope Rosetta is fixed soon!

        im here until rosetta is fixed

        Profile anders n

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        Message 3344 - Posted 6 Sep 2007 13:25:17 UTC

          Hi all :)

          How about some work on Ralph to take some load off Rosetta when !? it come
          back to life;)

          Anders n
          ____________

          Rhiju
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          Message 3345 - Posted 7 Sep 2007 3:20:12 UTC - in response to Message 3344.

            Hey everybody, thanks for the support!

            This is a particularly crazy time because we are in the midst of the CAPRI competition to predict protein-protein interactions, and we\'d really like to run some workunits. There are two \"puzzles\" that we\'ve been given and they\'re both pretty cool, related to the interactions of some important signaling proteins (the so-called GTPases and the plexins).

            We just got the ability to queue stuff to ralph so you\'ll start seeing some jobs. By the way, the first round that I sent out had a silly error (which I just fixed); sorry about that. Looking forward to getting ralph and rosetta running smoothly again!

            Hi all :)

            How about some work on Ralph to take some load off Rosetta when !? it come
            back to life;)

            Anders n


            ____________

            Snagletooth

            Joined: May 4 07
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            Message 3346 - Posted 7 Sep 2007 4:41:09 UTC - in response to Message 3345.

              Last modified: 7 Sep 2007 4:42:31 UTC

              We just got the ability to queue stuff to ralph so you\'ll start seeing some jobs. By the way, the first round that I sent out had a silly error (which I just fixed); sorry about that. Looking forward to getting ralph and rosetta running smoothly again!



              Does the \"silly error\" have anything to do with this message:

              WARNING! Not sure non-ideal rotamers are compatible with symmetry yet...

              from 556979?

              Snags

              Profile anders n

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              Message 3347 - Posted 7 Sep 2007 7:58:43 UTC

                <error_code>-161</error_code>
                On this Wu on a MAC

                Anders n
                ____________

                Profile anders n

                Joined: Feb 16 06
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                Message 3348 - Posted 7 Sep 2007 10:42:38 UTC

                  MAC again

                  \"Rosetta score is stuck or going too long. Watchdog is ending the run!
                  Stuck at score -222.427 for 900 seconds\"

                  This Wu.

                  Anders n

                  ____________

                  Profile iwi
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                  Joined: Jan 26 07
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                  Message 3349 - Posted 7 Sep 2007 13:19:31 UTC

                    Result ID 628545
                    Name 1lfd__BOINC_NOUNBOUNDROT_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2285_19_0
                    Workunit 558397
                    Created 7 Sep 2007 3:58:41 UTC
                    Sent 7 Sep 2007 4:02:36 UTC
                    Received 7 Sep 2007 12:10:09 UTC
                    Server state Over
                    Outcome Success
                    Client state Done
                    Exit status 0 (0x0)
                    Computer ID 6493
                    Report deadline 11 Sep 2007 4:02:36 UTC
                    CPU time 25200.546606
                    stderr out <core_client_version>5.8.11</core_client_version>
                    <![CDATA[
                    <stderr_txt>
                    # cpu_run_time_pref: 72000
                    # random seed: 2187839
                    **********************************************************************
                    Rosetta score is stuck or going too long. Watchdog is ending the run!
                    Stuck at score -221.51 for 900 seconds
                    **********************************************************************
                    GZIP SILENT FILE: .\\xx1lfd.out

                    </stderr_txt>
                    ]]>
                    Validate state Valid
                    Claimed credit 54.9077026188714
                    Granted credit 61.1646064369449
                    application version 5.78

                    Viking69

                    Joined: Feb 21 06
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                    Message 3350 - Posted 7 Sep 2007 14:13:07 UTC

                      All the latest WU\'s errored out,

                      629711 557911 7 Sep 2007 10:19:28 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 3,549.00 7.79 ---
                      629705 557826 7 Sep 2007 10:15:17 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 3,393.52 7.45 ---
                      629692 558751 7 Sep 2007 10:06:54 UTC 7 Sep 2007 14:09:07 UTC Over Client error Compute error 29.80 0.07 ---
                      629673 557766 7 Sep 2007 9:37:12 UTC 7 Sep 2007 10:53:31 UTC Over Client error Compute error 3,680.92 8.08 ---
                      629666 557998 7 Sep 2007 9:25:38 UTC 7 Sep 2007 12:59:48 UTC Over Client error Compute error 3,424.75 7.95

                      are these what you fixed for the \"silly error\" ?

                      Marky-UK

                      Joined: Feb 16 06
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                      Message 3351 - Posted 7 Sep 2007 15:53:47 UTC

                        Last modified: 7 Sep 2007 15:54:51 UTC

                        Three errors:

                        Result 628787 after 3566 seconds:

                        <file_name>1lfd__BOINC_NOUNBOUNDROT_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2283_13_1_0</file_name>
                        <error_code>-161</error_code>


                        Result 628816 after 9 seconds:
                        <message>
                        Incorrect function. (0x1) - exit code 1 (0x1)
                        </message>
                        <stderr_txt>
                        # cpu_run_time_pref: 3600
                        # random seed: 2186800
                        ERROR:: Exit from: .\\loop_class.cc line: 138
                        </stderr_txt>


                        Result 628868 after 9 seconds:
                        <message>
                        Incorrect function. (0x1) - exit code 1 (0x1)
                        </message>
                        <stderr_txt>
                        # cpu_run_time_pref: 3600
                        # random seed: 2186798
                        ERROR:: Exit from: .\\loop_class.cc line: 138
                        </stderr_txt>

                        Profile anders n

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                        Message 3352 - Posted 7 Sep 2007 16:10:26 UTC - in response to Message 3348.

                          MAC again

                          \"Rosetta score is stuck or going too long. Watchdog is ending the run!
                          Stuck at score -222.427 for 900 seconds\"

                          This Wu.

                          Anders n


                          I´m holding Ralph wu-s for now on my MAC. They all end like above.
                          What do you want me to do?
                          Anders n

                          ____________

                          darkpella

                          Joined: Mar 30 06
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                          Message 3353 - Posted 7 Sep 2007 17:11:05 UTC

                            Last modified: 7 Sep 2007 17:14:30 UTC

                            Hi,

                            this WU failed on my PC (my result for this WU is this one).

                            WU was crunched on a 3,00 GHZ Xeon 2/ 1 GB RAM machine running on Win Server 2k3 R2 and BOINC Core 5.10.13

                            Below you may find trascripts of BOINC Manager\'s log.

                            Best regards
                            darkpella



                            07/09/2007 18.43.27|ralph@home|Computation for task t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 finished
                            07/09/2007 18.43.27|ralph@home|Output file t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1_0 for task t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 absent
                            07/09/2007 18.43.29|ralph@home|Deferring communication for 1 min 0 sec
                            07/09/2007 18.43.29|ralph@home|Reason: Unrecoverable error for result t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1 (<file_xfer_error> <file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_plexinmonomer__2284_49_1_0</file_name> <error_code>-161</error_code></file_xfer_error>)

                            ____________

                            darkpella

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                            Message 3354 - Posted 7 Sep 2007 17:12:22 UTC

                              Last modified: 7 Sep 2007 17:15:35 UTC

                              /edit

                              oops, pressed send button twice!
                              ____________

                              Dr Who Fan
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                              Message 3355 - Posted 7 Sep 2007 21:03:54 UTC

                                Last modified: 7 Sep 2007 21:04:24 UTC

                                Error:
                                Result ID = 627997 / Workunit = 557886

                                <core_client_version>5.10.20</core_client_version>
                                <![CDATA[
                                <stderr_txt>
                                # cpu_run_time_pref: 7200
                                # random seed: 2188080
                                ======================================================
                                DONE :: 1 starting structures 6897.8 cpu seconds
                                This process generated 20 decoys from 20 attempts
                                0 starting pdbs were skipped
                                ======================================================


                                BOINC :: Watchdog shutting down...
                                BOINC :: BOINC support services shutting down...

                                </stderr_txt>
                                <message>
                                <file_xfer_error>
                                <file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-nosillyloop_nodimerloop_plexinmonomer__2284_28_0_0</file_name>
                                <error_code>-161</error_code>
                                </file_xfer_error>

                                </message>
                                ]]>
                                ____________

                                Dr Who Fan
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                                Message 3356 - Posted 8 Sep 2007 0:17:29 UTC

                                  Error:
                                  Result ID = 629993 / Workunit = 557909

                                  <core_client_version>5.10.20</core_client_version>
                                  <![CDATA[
                                  <stderr_txt>
                                  # cpu_run_time_pref: 7200
                                  # random seed: 2187926
                                  ======================================================
                                  DONE :: 1 starting structures 6897.77 cpu seconds
                                  This process generated 21 decoys from 21 attempts
                                  0 starting pdbs were skipped
                                  ======================================================


                                  BOINC :: Watchdog shutting down...
                                  BOINC :: BOINC support services shutting down...

                                  </stderr_txt>
                                  <message>
                                  <file_xfer_error>
                                  <file_name>t030__BOINC_CAPRI14_DOCK_FIXBACKBONE-t030_-plexinmonomer__2284_32_2_0</file_name>
                                  <error_code>-161</error_code>
                                  </file_xfer_error>

                                  </message>
                                  ]]>
                                  ____________

                                  ramostol

                                  Joined: Mar 29 07
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                                  Message 3357 - Posted 8 Sep 2007 8:12:50 UTC

                                    Same error -161 after this wu.

                                    Computing seems to complete normally, but Boinc/Rosetta finds no result file.

                                    rochester new york

                                    Joined: Sep 6 07
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                                    Message 3358 - Posted 8 Sep 2007 11:40:15 UTC

                                      any news about rosetta??

                                      HTH

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                                      Message 3359 - Posted 9 Sep 2007 6:56:56 UTC

                                        A compute error in this result.
                                        ____________

                                        McSummation

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                                        Message 3363 - Posted 10 Sep 2007 3:43:54 UTC - in response to Message 3341.

                                          I\'ve gotten errors on the last 2 WU\'s:
                                          This one on Sept 7 - http://ralph.bakerlab.org/result.php?resultid=630040
                                          And this one just now (9th) - http://ralph.bakerlab.org/result.php?resultid=630305

                                          Rosetta is running just fine on Beta 5.78.

                                          This is a Pentium 4 running at 3.2 GHz, running XP SP2.

                                          Profile Conan
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                                          Message 3364 - Posted 11 Sep 2007 15:56:07 UTC

                                            This error

                                            <core_client_version>5.8.16</core_client_version>
                                            <![CDATA[
                                            <stderr_txt>
                                            Graphics are disabled due to configuration...
                                            # cpu_run_time_pref: 21600
                                            # random seed: 2188390
                                            ======================================================
                                            DONE :: 1 starting structures 21591.1 cpu seconds
                                            This process generated 138 decoys from 138 attempts
                                            0 starting pdbs were skipped
                                            ======================================================


                                            BOINC :: Watchdog shutting down...
                                            BOINC :: BOINC support services shutting down...

                                            </stderr_txt>
                                            <message>
                                            <file_xfer_error>
                                            <file_name>1lfd__BOINC_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2283_18_0_0</file_name>
                                            <error_code>-161</error_code>
                                            </file_xfer_error>

                                            on This WU
                                            and This WU
                                            ____________

                                            BigMike
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                                            Message 3377 - Posted 18 Sep 2007 14:53:07 UTC

                                              Another flavor of the -161 error:

                                              <core_client_version>5.10.20</core_client_version>
                                              <![CDATA[
                                              <stderr_txt>
                                              # cpu_run_time_pref: 86400
                                              # random seed: 2188376
                                              **********************************************************************
                                              Rosetta score is stuck or going too long. Watchdog is ending the run!
                                              Stuck at score 265.852 for 900 seconds
                                              **********************************************************************

                                              </stderr_txt>
                                              <message>
                                              <file_xfer_error>
                                              <file_name>1lfd__BOINC_CAPRI14_DOCK_FIXBACKBONE-1lfd_-_2283_32_2_0</file_name>
                                              <error_code>-161</error_code>
                                              </file_xfer_error>

                                              </message>
                                              ]]>

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