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Profile dekim
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Message 4145 - Posted 24 Jun 2008 23:32:20 UTC

    Please post bugs/issues regarding version 5.98 here.

    This version includes a boinc api fix that should return status 0 (success) when tasks finish the rosetta working thread okay but then produce an error after boinc_finish(0) is called. This fix is specifically for the t405 type jobs that have been giving access violations after tasks were finished.

    Please look out for tasks that appear to be stuck and report here.
    ____________

    Jipsu

    Joined: Mar 11 08
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    Message 4152 - Posted 27 Jun 2008 19:38:52 UTC

      FRA_t449_CASP8_MANUAL_1_IGNORE_THE_RESTt449_1_ttxxxxT0449_1CHIM_0001_0001_0001_4584_6_0

      <core_client_version>5.10.45</core_client_version>
      <![CDATA[
      <message>
      process exited with code 1 (0x1, -255)
      </message>
      <stderr_txt>
      Graphics are disabled due to configuration...
      # cpu_run_time_pref: 86400
      # random seed: 1173943
      ERROR:: Exit from: loop_relax.cc line: 1745

      </stderr_txt>
      ]]>

      http://ralph.bakerlab.org/result.php?resultid=1048265

      Odysseus

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      Message 4153 - Posted 3 Jul 2008 6:28:33 UTC

        My G5 Mac got an error on FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4596_9, error code –161:

        Wed  2 Jul 23:51:37 2008|ralph@home|Computation for task FRA_t451_CASP8_[…]_1_axmin1_0001_4596_9_1 finished
        Wed 2 Jul 23:51:37 2008|ralph@home|Output file FRA_t451_CASP8_[…]_1_axmin1_0001_4596_9_1_0
        for task FRA_t451_CASP8_[…]_1_axmin1_0001_4596_9_1 absent

        It would be nice if this forum could be updated to support [code] tags, especially with these long WU names …

        Pepo
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        Message 4154 - Posted 3 Jul 2008 9:54:22 UTC

          The FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4594_10_0 exited with code 1: \"ERROR:: Exit from: barcode_classes.cc line: 657\" after 73.5 seconds runtime. The same happened to wingman (both are Windows).

          Peter

          Jipsu

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          Message 4156 - Posted 3 Jul 2008 12:01:27 UTC

            FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4599_7_0

            <core_client_version>6.2.7</core_client_version>
            <![CDATA[
            <stderr_txt>
            Graphics are disabled due to configuration...
            # cpu_run_time_pref: 86400
            # random seed: 1173207
            ======================================================
            DONE :: 1 starting structures 75928.6 cpu seconds
            This process generated 5 decoys from 5 attempts
            0 starting pdbs were skipped
            ======================================================


            BOINC :: Watchdog shutting down...
            BOINC :: BOINC support services shutting down...
            called boinc_finish

            </stderr_txt>
            <message>
            <file_xfer_error>
            <file_name>FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4599_7_0_0</file_name>
            <error_code>-161</error_code>
            </file_xfer_error>

            </message>
            ]]>

            Azurrio

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            Message 4160 - Posted 4 Jul 2008 7:35:26 UTC

              Failure

              Bob Browett

              Joined: May 27 08
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              Message 4162 - Posted 7 Jul 2008 8:00:46 UTC

                I had to abort a unit which became a CPU hog
                07/07/2008 08:40:35|ralph@home|Starting task n002__BOINC_DIMER_SYMM_FOLD_AND_DOCK-n002_-t484__4630_48_0 using rosetta_beta version 598
                07/07/2008 08:40:37|ralph@home|Started upload of n001__BOINC_MONOMER_ABRELAX-n001_-t484__4633_47_0_0
                07/07/2008 08:40:40|ralph@home|Finished upload of n001__BOINC_MONOMER_ABRELAX-n001_-t484__4633_47_0_0
                07/07/2008 08:40:43|ralph@home|Sending scheduler request: To report completed tasks. Requesting 0 seconds of work, reporting 1 completed tasks
                07/07/2008 08:40:48|ralph@home|Scheduler request succeeded: got 0 new tasks
                07/07/2008 08:54:19|ralph@home|Starting n006__BOINC_MONOMER_ABRELAX-n006_-t484__4632_46_0
                07/07/2008 08:54:19|ralph@home|Starting task n006__BOINC_MONOMER_ABRELAX-n006_-t484__4632_46_0 using rosetta_beta version 598
                07/07/2008 08:54:22|ralph@home|Computation for task n002__BOINC_DIMER_SYMM_FOLD_AND_DOCK-n002_-t484__4630_48_0 finished
                07/07/2008 08:55:20|ralph@home|Sending scheduler request: To report completed tasks. Requesting 0 seconds of work, reporting 1 completed tasks
                07/07/2008 08:55:25|ralph@home|Scheduler request succeeded: got 0 new tasks

                Task n002__BOINC_DIMER_SYMM_FOLD_AND_DOCK-n002_-t484__4630_48_0 using rosetta_beta version 598

                If I can provide any furthur information, please let me know

                Regards
                Bob

                AdeB
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                Message 4172 - Posted 31 Jul 2008 19:22:02 UTC

                  segmentation violation

                  Snagletooth

                  Joined: May 4 07
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                  Message 4175 - Posted 13 Aug 2008 10:43:30 UTC

                    Both computers attempting this one failed with the same error:

                    MFR_ABRELAX_PICKED_TR5d__4731_6_2


                    stderr out

                    <core_client_version>5.10.45</core_client_version>
                    <![CDATA[
                    <stderr_txt>
                    Rosetta@home Macintosh Stack Size checker.
                    Original size: 0.
                    Maximum size: 8388608.
                    RLIM_INFINITY 0
                    # cpu_run_time_pref: 14400
                    # random seed: 1052640
                    ======================================================
                    DONE :: 1 starting structures 15594.9 cpu seconds
                    This process generated 1 decoys from 1 attempts
                    ======================================================


                    BOINC :: Watchdog shutting down...
                    BOINC :: BOINC support services shutting down...

                    </stderr_txt>
                    <message>
                    <file_xfer_error>
                    <file_name>MFR_ABRELAX_PICKED_TR5d__4731_6_2_0</file_name>
                    <error_code>-161</error_code>
                    </file_xfer_error>

                    </message>
                    ]]>

                    Profile feet1st

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                    Message 4176 - Posted 13 Aug 2008 12:46:58 UTC

                      Snagletooth, a file transfer error, but only after you completed a model. And given the file name, it looks like your machine finally gave up on trying to upload the result file. Have you had any other upload problems?
                      ____________

                      Snagletooth

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                      Message 4177 - Posted 14 Aug 2008 7:37:49 UTC - in response to Message 4176.

                        Snagletooth, a file transfer error, but only after you completed a model. And given the file name, it looks like your machine finally gave up on trying to upload the result file. Have you had any other upload problems?



                        No but since the other cruncher who attempted this wu before me reported the same error I assumed the problem is with the wu. I\'ve noticed other folks have occasionally reported this error for different types of wus and I have become curious about the cause. Can you offer any enlightenment?


                        Snags

                        Profile feet1st

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                        Message 4178 - Posted 14 Aug 2008 12:06:46 UTC

                          Well, I assume that one way to cause this to happen would be to abort the transfer from the transfers tab in the advanced view. But, I doubt you did that, and especially since both had the same problem.

                          Have there been any BOINC problems?? I understand there is some handshaking and authorizations that take place to permit your upload while thwarting SPAMers. Perhaps there is a problem with that process? Or, one of the things I think they exchange is the file size. Perhaps the out file for this task grew unexpectedly large? Hopefully Ralph team can shed some light.
                          ____________

                          Snagletooth

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                          Message 4179 - Posted 14 Aug 2008 20:25:07 UTC - in response to Message 4178.

                            Well, I assume that one way to cause this to happen would be to abort the transfer from the transfers tab in the advanced view. But, I doubt you did that, and especially since both had the same problem.

                            Have there been any BOINC problems?? I understand there is some handshaking and authorizations that take place to permit your upload while thwarting SPAMers. Perhaps there is a problem with that process? Or, one of the things I think they exchange is the file size. Perhaps the out file for this task grew unexpectedly large? Hopefully Ralph team can shed some light.


                            There have have been no other BOINC problems. I haven\'t gotten another Ralph wu yet but I have successfully finished, uploaded, and reported results from other projects: wus I received before, during, and after the ralph wu crunched.
                            I was away from the computer while this one was finishing up and returned to find it\'s status listed as \"computation error\" instead of \"ready to report\" as I would have expected if everything finished and uploaded normally. I just went back through the message logs and found this:
                            Wed Aug 13 03:56:13 2008|ralph@home|Computation for task MFR_ABRELAX_PICKED_TR5d__4731_6_2 finished
                            Wed Aug 13 03:56:13 2008|ralph@home|Output file MFR_ABRELAX_PICKED_TR5d__4731_6_2_0 for task MFR_ABRELAX_PICKED_TR5d__4731_6_2 absent
                            I think -161 may be a bit of a catchall error code as it seems to include problems with the creation of the file to be transferred as well as problems with the transfer itself. Obviously some info is reported as the stderr out for both my co-cruncher and I shows one decoy completed. My co-cruncher has since successfully completed another Ralph WU so I\'m inclined to think it the problem is with the wu rather than something on our ends. Of course by now the project may well have discovered the problem, fixed it and moved on. Do you know how to search for this particular protein/app combo as crunched by others, here or on Rosetta, to find out if this is the case?

                            Snags

                            Profile feet1st

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                            Message 4181 - Posted 15 Aug 2008 12:07:50 UTC

                              Do you know how to search for this particular protein/app combo as crunched by others, here or on Rosetta, to find out if this is the case?


                              I believe the project team would have to run a query to answer a question like that.
                              ____________

                              AdeB
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                              Message 4227 - Posted 29 Sep 2008 20:32:57 UTC

                                This task had an error at startup.

                                stderr out:

                                <core_client_version>5.10.45</core_client_version>
                                <![CDATA[
                                <message>
                                process exited with code 1 (0x1, -255)
                                </message>
                                <stderr_txt>
                                Graphics are disabled due to configuration...
                                ERROR:: Exit from: options.cc line: 525

                                </stderr_txt>
                                ]]>

                                Path7

                                Joined: Feb 11 08
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                                Message 4228 - Posted 29 Sep 2008 20:50:47 UTC

                                  Hello,

                                  Had the same error:
                                  ERROR:: Exit from: options.cc line: 525
                                  Task details

                                  Have a nice day,
                                  Path7.

                                  Pepo
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                                  Message 4230 - Posted 30 Sep 2008 14:54:13 UTC - in response to Message 4228.

                                    Had the same error:
                                    ERROR:: Exit from: options.cc line: 525

                                    Me too: t042_1_NMRREF_1_t015_1_S_00001_0000163IGNORE_THE_REST_040000_5065_48_0.

                                    Peter

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                                    Message 4665 - Posted 6 Feb 2009 21:08:02 UTC

                                      2dlb__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2dlb_-native_frag__7418_3_0

                                      CPU time 6.359375
                                      stderr out

                                      <core_client_version>6.4.5</core_client_version>
                                      <![CDATA[
                                      <message>
                                      Incorrect function. (0x1) - exit code 1 (0x1)
                                      </message>
                                      <stderr_txt>
                                      # cpu_run_time_pref: 14400
                                      # random seed: 3363599
                                      ERROR:: Exit from: .\fragments.cc line: 769

                                      </stderr_txt>
                                      ]]>

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                                      Message 4666 - Posted 6 Feb 2009 21:11:35 UTC

                                        2mlt__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2mlt_-native_frag__7418_1_0

                                        big error dump
                                        <core_client_version>6.4.5</core_client_version>
                                        <![CDATA[
                                        <message>
                                        - exit code -1073741819 (0xc0000005)
                                        </message>
                                        <stderr_txt>
                                        # cpu_run_time_pref: 14400
                                        # random seed: 3363541


                                        Unhandled Exception Detected...

                                        - Unhandled Exception Record -
                                        Reason: Access Violation (0xc0000005) at address 0x008BB7E2 read attempt to address 0x122B0000

                                        Engaging BOINC Windows Runtime Debugger...

                                        Dump Timestamp : 02/06/09 22:07:25
                                        LoadLibraryA( symsrv.dll ): GetLastError = 126
                                        LoadLibraryA( srcsrv.dll ): GetLastError = 126
                                        Debugger Engine : 4.0.5.0
                                        Symbol Search Path: E:\boinc\projects\slots\3;E:\boinc\projects\projects\ralph.bakerlab.org;srv*C:\DOCUME~1\Me\LOCALS~1\Temp\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\DOCUME~1\Me\LOCALS~1\Temp\symbols*http://boinc.bakerlab.org/rosetta/symstore


                                        SymGetModuleInfo(): GetLastError = 87
                                        ModLoad: 00000000 00000000 ( Symbols Loaded)

                                        these last two lines repeat more than 10 times.

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                                        Message 4667 - Posted 6 Feb 2009 21:13:03 UTC

                                          Last modified: 6 Feb 2009 21:15:32 UTC

                                          2dlb__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2dlb_-native_frag__7418_1_0
                                          5.9375
                                          stderr out

                                          <core_client_version>6.4.5</core_client_version>
                                          <![CDATA[
                                          <message>
                                          Incorrect function. (0x1) - exit code 1 (0x1)
                                          </message>
                                          <stderr_txt>
                                          # cpu_run_time_pref: 14400
                                          # random seed: 3363601
                                          ERROR:: Exit from: .\fragments.cc line: 769

                                          </stderr_txt>
                                          ]]>

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                                          Message 4668 - Posted 6 Feb 2009 21:18:30 UTC

                                            1irg__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1irg_-native_frag__7418_1_0
                                            Exit status -1073741819 (0xffffffffc0000005)

                                            CPU time 271.375
                                            stderr out

                                            <core_client_version>6.4.5</core_client_version>
                                            <![CDATA[
                                            <message>
                                            - exit code -1073741819 (0xc0000005)
                                            </message>
                                            <stderr_txt>
                                            # cpu_run_time_pref: 14400
                                            # random seed: 3363701


                                            Unhandled Exception Detected...

                                            - Unhandled Exception Record -
                                            Reason: Access Violation (0xc0000005) at address 0x008BB9A5 read attempt to address 0x12166000

                                            Engaging BOINC Windows Runtime Debugger...



                                            ********************


                                            BOINC Windows Runtime Debugger Version 6.1.5


                                            Dump Timestamp : 02/06/09 14:25:57
                                            LoadLibraryA( symsrv.dll ): GetLastError = 126
                                            LoadLibraryA( srcsrv.dll ): GetLastError = 126
                                            Debugger Engine : 4.0.5.0
                                            Symbol Search Path: E:\boinc\projects\slots\3;E:\boinc\projects\projects\ralph.bakerlab.org;srv*C:\DOCUME~1\Me\LOCALS~1\Temp\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\DOCUME~1\Me\LOCALS~1\Temp\symbols*http://boinc.bakerlab.org/rosetta/symstore


                                            SymGetModuleInfo(): GetLastError = 87
                                            ModLoad: 00000000 00000000 ( Symbols Loaded

                                            the above 2 lines repeat greater than 10 times

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                                            Message 4669 - Posted 6 Feb 2009 21:21:54 UTC

                                              1irg__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1irg_-native_frag__7418_2_0

                                              symbols error again
                                              ran 184 seconds

                                              <core_client_version>6.4.5</core_client_version>
                                              <![CDATA[
                                              <message>
                                              - exit code -1073741819 (0xc0000005)
                                              </message>
                                              <stderr_txt>
                                              # cpu_run_time_pref: 14400
                                              # random seed: 3363700


                                              Unhandled Exception Detected...

                                              - Unhandled Exception Record -
                                              Reason: Access Violation (0xc0000005) at address 0x008BB955 read attempt to address 0x11FF1000

                                              Engaging BOINC Windows Runtime Debugger...

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                                              Message 4670 - Posted 7 Feb 2009 9:54:53 UTC

                                                2dlb__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2dlb_-native_frag__7418_2_0
                                                CPU time 4.953125
                                                stderr out

                                                <core_client_version>6.4.5</core_client_version>
                                                <![CDATA[
                                                <message>
                                                Incorrect function. (0x1) - exit code 1 (0x1)
                                                </message>
                                                <stderr_txt>
                                                # cpu_run_time_pref: 14400
                                                # random seed: 3363600
                                                ERROR:: Exit from: .\fragments.cc line: 769

                                                </stderr_txt>

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                                                Message 4672 - Posted 8 Feb 2009 15:36:54 UTC

                                                  1irg__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1irg_-native_frag__7418_3_0
                                                  Client state Compute error
                                                  Exit status -1073741819 (0xffffffffc0000005)
                                                  CPU time 284.4531
                                                  stderr out

                                                  <core_client_version>6.4.5</core_client_version>
                                                  <![CDATA[
                                                  <message>
                                                  - exit code -1073741819 (0xc0000005)
                                                  </message>
                                                  <stderr_txt>
                                                  # cpu_run_time_pref: 14400
                                                  # random seed: 3363699


                                                  Unhandled Exception Detected...

                                                  - Unhandled Exception Record -
                                                  Reason: Access Violation (0xc0000005) at address 0x008BB9A5 read attempt to address 0x137DC000

                                                  Engaging BOINC Windows Runtime Debugger...

                                                  -------

                                                  2mlt__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2mlt_-native_frag__7418_2_0


                                                  same as above
                                                  run time: 177.8281 seconds

                                                  Profile feet1st

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                                                  Message 4786 - Posted 17 Apr 2009 2:20:28 UTC

                                                    This one is running over 5 hours per model. It is called r120g_BOINC_SYMM_FOLD_AND_DOCK_RELAX-r120g-_9223_30_0
                                                    ____________

                                                    Odysseus

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                                                    Message 4983 - Posted 15 Oct 2009 22:27:36 UTC

                                                      Last modified: 15 Oct 2009 22:38:41 UTC

                                                      My G4 Mac has had errors on the last few tasks it tried: the most recent result says:

                                                      <core_client_version>5.10.20</core_client_version>
                                                      <![CDATA[
                                                      <stderr_txt>
                                                      Rosetta@home Macintosh Stack Size checker.
                                                      Original size: 0.
                                                      Maximum size: 8388608.
                                                      RLIM_INFINITY 0
                                                      # cpu_run_time_pref: 7200
                                                      ERROR:: Unable to determine sequence length from pdb file
                                                      ======================================================
                                                      DONE :: 1 starting structures 38.8 cpu seconds
                                                      This process generated 0 decoys from 0 attempts
                                                      1 starting pdbs were skipped
                                                      ======================================================

                                                      BOINC :: Watchdog shutting down...
                                                      BOINC :: BOINC support services shutting down...

                                                      </stderr_txt>
                                                      <message>
                                                      <file_xfer_error>
                                                      <file_name>Rossmann2x3_f001_relax_12429_2_1_0</file_name>
                                                      <error_code>-161</error_code>
                                                      </file_xfer_error>

                                                      </message>

                                                      My G5 hasn’t managed to get any work from here since May.

                                                      Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98


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