minirosetta v1.41 bug thread

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James
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Message 4343 - Posted: 16 Nov 2008, 22:48:47 UTC

I\'ve just updated minirosetta to version 1.41. Please post about bugs/issues here.
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Message 4351 - Posted: 21 Nov 2008, 8:38:22 UTC

rlb_test_ralph_splitterms2_rlb_2d4f_IGNORE_THE_REST_DECOY_5551_1_1 prematurely exited after 2.2 sec runtime with code 1 (Linux 2.6.9-42.0.2.EL host, BCC 6.3.21):

process exited with code 1 (0x1, -255)
ERROR: Unable to open weights. Neither ./2nd_iter_high_atr.wts nor minirosetta_database/scoring/weights/2nd_iter_high_atr.wts exist
ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 57



loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0 exited after nearly 2 hours runtime (Win XP SP3 host, BCC 6.4.0):

# cpu_run_time_pref: 7200
WARNING! attempt to create gzipped file ../../projects/ralph.bakerlab.org/loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0_0 failed.
======================================================
DONE :: 1 starting structures 7048.28 cpu seconds
This process generated 31 decoys from 31 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

<file_xfer_error>
<file_name>loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>


As someone noted few days ago in other thread, these file names (on my system, path 88 + filename 160 chars) are everything but short...

Peter
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Message 4352 - Posted: 21 Nov 2008, 17:31:46 UTC - in response to Message 4343.  

This process generated 0 decoys from 0 attempts – Outcome Success

The next WU:
rlb_2nd_iter_high_atr_rlb_1wgb_IGNORE_THE_REST_DECOY_5514_1_0
ended valid, however also had the message:
DONE :: 1037 starting structures 9208.53 cpu seconds
This process generated 0 decoys from 0 attempts

# cpu_run_time_pref: 7200
Windows XP-home SP3 – Boinc 5.10.45

Have a nice day,
Path7.

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Message 4354 - Posted: 21 Nov 2008, 20:49:10 UTC

task id: 1184232
workunit: rlb_test_ralph_splitterms2_rlb_5cro_IGNORE_THE_REST_DECOY_5551_1

process exited with code 1 (0x1, -255)

ERROR: Unable to open weights. Neither ./2nd_iter_high_atr.wts nor minirosetta_database/scoring/weights/2nd_iter_high_atr.wts exist
ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 57
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Message 4358 - Posted: 25 Nov 2008, 12:21:18 UTC

Got a "Validate Error" on this one
Also a heap of recovering checkpoint of tag, I only copied the first few lines as it went for pages.

<stderr_txt>
recovering checkpoint of tag S_1B0NA_7_00000001 with id abrelax_rg_state
# cpu_run_time_pref: 21600
recovering checkpoint of tag S_1B0NA_7_00000002 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000003 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000004 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000005 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000006 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000007 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000008 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000009 with id abrelax_rg_state
recovering checkpoint of tag S_1B0NA_7_00000010 with id abrelax_rg_state
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Message 4362 - Posted: 27 Nov 2008, 1:10:51 UTC

Another "Validate Error" on 1185336

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