RALPH@home

minirosetta v1.41 bug thread

  UW Seal
 
[ Home ] [ Join ] [ About ] [ Participants ] [ Community ] [ Statistics ]
  [ login/out ]


Advanced search

Message boards : RALPH@home bug list : minirosetta v1.41 bug thread

AuthorMessage
James
Forum moderator
Project developer
Project scientist

Joined: Jun 22 06
Posts: 19
ID: 1548
Credit: 278
RAC: 0
Message 4343 - Posted 16 Nov 2008 22:48:47 UTC

    I\'ve just updated minirosetta to version 1.41. Please post about bugs/issues here.
    ____________

    Pepo
    Avatar

    Joined: Sep 8 06
    Posts: 104
    ID: 1812
    Credit: 36,890
    RAC: 0
    Message 4351 - Posted 21 Nov 2008 8:38:22 UTC

      rlb_test_ralph_splitterms2_rlb_2d4f_IGNORE_THE_REST_DECOY_5551_1_1 prematurely exited after 2.2 sec runtime with code 1 (Linux 2.6.9-42.0.2.EL host, BCC 6.3.21):

      process exited with code 1 (0x1, -255)
      ERROR: Unable to open weights. Neither ./2nd_iter_high_atr.wts nor minirosetta_database/scoring/weights/2nd_iter_high_atr.wts exist
      ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 57



      loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0 exited after nearly 2 hours runtime (Win XP SP3 host, BCC 6.4.0):

      # cpu_run_time_pref: 7200
      WARNING! attempt to create gzipped file ../../projects/ralph.bakerlab.org/loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0_0 failed.
      ======================================================
      DONE :: 1 starting structures 7048.28 cpu seconds
      This process generated 31 decoys from 31 attempts
      ======================================================
      BOINC :: Watchdog shutting down...
      BOINC :: BOINC support services shutting down...
      called boinc_finish

      <file_xfer_error>
      <file_name>loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0_0</file_name>
      <error_code>-161</error_code>
      </file_xfer_error>


      As someone noted few days ago in other thread, these file names (on my system, path 88 + filename 160 chars) are everything but short...

      Peter

      Path7

      Joined: Feb 11 08
      Posts: 56
      ID: 4036
      Credit: 4,974
      RAC: 0
      Message 4352 - Posted 21 Nov 2008 17:31:46 UTC - in response to Message 4343.

        This process generated 0 decoys from 0 attempts – Outcome Success

        The next WU:
        rlb_2nd_iter_high_atr_rlb_1wgb_IGNORE_THE_REST_DECOY_5514_1_0
        ended valid, however also had the message:
        DONE :: 1037 starting structures 9208.53 cpu seconds
        This process generated 0 decoys from 0 attempts

        # cpu_run_time_pref: 7200
        Windows XP-home SP3 – Boinc 5.10.45

        Have a nice day,
        Path7.

        AdeB
        Avatar

        Joined: Dec 22 07
        Posts: 61
        ID: 3888
        Credit: 102,300
        RAC: 97
        Message 4354 - Posted 21 Nov 2008 20:49:10 UTC

          task id: 1184232
          workunit: rlb_test_ralph_splitterms2_rlb_5cro_IGNORE_THE_REST_DECOY_5551_1

          process exited with code 1 (0x1, -255)

          ERROR: Unable to open weights. Neither ./2nd_iter_high_atr.wts nor minirosetta_database/scoring/weights/2nd_iter_high_atr.wts exist
          ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 57

          Profile Conan
          Avatar

          Joined: Feb 16 06
          Posts: 344
          ID: 145
          Credit: 1,309,534
          RAC: 0
          Message 4358 - Posted 25 Nov 2008 12:21:18 UTC

            Got a "Validate Error" on this one
            Also a heap of recovering checkpoint of tag, I only copied the first few lines as it went for pages.

            <stderr_txt>
            recovering checkpoint of tag S_1B0NA_7_00000001 with id abrelax_rg_state
            # cpu_run_time_pref: 21600
            recovering checkpoint of tag S_1B0NA_7_00000002 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000003 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000004 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000005 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000006 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000007 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000008 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000009 with id abrelax_rg_state
            recovering checkpoint of tag S_1B0NA_7_00000010 with id abrelax_rg_state
            ____________

            Profile Conan
            Avatar

            Joined: Feb 16 06
            Posts: 344
            ID: 145
            Credit: 1,309,534
            RAC: 0
            Message 4362 - Posted 27 Nov 2008 1:10:51 UTC

              Another "Validate Error" on 1185336

              ____________

              Message boards : RALPH@home bug list : minirosetta v1.41 bug thread


              Home | Join | About | Participants | Community | Statistics

              Copyright © 2017 University of Washington

              Last Modified: 20 Nov 2008 19:41:56 UTC
              Back to top ^