Minirosetta 2.00

Message boards : RALPH@home bug list : Minirosetta 2.00

To post messages, you must log in.

AuthorMessage
Snagletooth

Send message
Joined: 4 May 07
Posts: 67
Credit: 131,792
RAC: 1
Message 4998 - Posted: 13 Nov 2009, 3:25:16 UTC
Last modified: 13 Nov 2009, 3:28:21 UTC

test1_t367_.1.pdb_t367_.1.loopfile_12945_1

appears to run fine but the output fine is absent:

======================================================
DONE :: 1 starting structures 10949.1 cpu seconds
This process generated 99 decoys from 99 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>test1_t367_.1.pdb_t367_.1.loopfile_12945_1_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>



Snags
ID: 4998 · Report as offensive    Reply Quote
Profile Ondra@SpaceFamily.CZ
Avatar

Send message
Joined: 26 Jun 09
Posts: 1
Credit: 2,010
RAC: 0
Message 4999 - Posted: 13 Nov 2009, 15:20:20 UTC

ID: 4999 · Report as offensive    Reply Quote
Snagletooth

Send message
Joined: 4 May 07
Posts: 67
Credit: 131,792
RAC: 1
Message 5000 - Posted: 15 Nov 2009, 0:09:23 UTC

Two quick failures:
2d4f_rebuild_loop_perturb_kic_refine_kic_relax_13002_5_1
ERROR: ERROR: FragmentIO: could not open file /work/mtyka/bench/fragments/2d4f/aa2d4fA09_05.200_v1_3.gz
ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 258
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
ID: 5000 · Report as offensive    Reply Quote
AdeB
Avatar

Send message
Joined: 22 Dec 07
Posts: 61
Credit: 154,462
RAC: 149
Message 5001 - Posted: 23 Nov 2009, 20:26:13 UTC

Quick failure in task 1662439.
Workunit: 2cgq_1yul.revert2.pdb.gz_dock_rmsd.xml__13145_1.
Computer / OS: AMD Phenom II / linux
stderr out:
...
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 14400
SIGABRT: abort called
Stack trace (24 frames):
[0x9667f13]
[0x9691de8]
[0xf7fd8400]
... etc
ID: 5001 · Report as offensive    Reply Quote
AdeB
Avatar

Send message
Joined: 22 Dec 07
Posts: 61
Credit: 154,462
RAC: 149
Message 5002 - Posted: 24 Nov 2009, 13:26:18 UTC
Last modified: 24 Nov 2009, 13:34:33 UTC

Another error: task 1663470
Workunit: 2cgq_1yul.revert2.pdb.gz_dock_rmsd.xml__13145_7
Computer / OS: AMD Athlon XP 2000 / linux
stderr out:
[color=red]*** glibc detected *** free(): invalid next size (fast): 0x0fcbd1b8 ***[/color]
SIGABRT: abort called
Stack trace (28 frames):
[0x9667f13]
[0x9691de8]
[0xffffe420]
... etc

AdeB
ID: 5002 · Report as offensive    Reply Quote
AdeB
Avatar

Send message
Joined: 22 Dec 07
Posts: 61
Credit: 154,462
RAC: 149
Message 5003 - Posted: 26 Nov 2009, 9:19:11 UTC

ID: 5003 · Report as offensive    Reply Quote
AdeB
Avatar

Send message
Joined: 22 Dec 07
Posts: 61
Credit: 154,462
RAC: 149
Message 5004 - Posted: 26 Nov 2009, 18:16:15 UTC

It looks like sooner or later most those lr5_combine_smooth_torsion_it00_redo_rama tasks end with: SIGSEGV: segmentation violation.

errors:
1666732
1667706
1668524
1668719
1668876
1669758

and one succes:
1669780

AdeB
ID: 5004 · Report as offensive    Reply Quote

Message boards : RALPH@home bug list : Minirosetta 2.00



©2018 University of Washington
http://www.bakerlab.org