Message boards : RALPH@home bug list : minirosetta 2.05
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dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0 |
This version update includes a checkpointing fix and minor code updates. Please post bugs/issues here. FYI, I skipped over version 2.04 on purpose. I was about to update the 2.04 app but part way through the updating process I had to include some other code updates. thanks, David K |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
2.05 task 9gbnnotyr_3gbn_1e5k_9Jan2010_13807_1_0 finished succesully, validate error occured. 4CPU Xeon 2.83GHz, 8GB RAM, XP x64. |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
2.05 task run2.loopbuild_hb_t286__IGNORE_THE_REST_13813_9_1 errored out after 25s. 4CPU Xeon 2.83GHz, 8GB RAM, XP x64. <core_client_version>6.10.24</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> |
Snagletooth Send message Joined: 4 May 07 Posts: 67 Credit: 134,427 RAC: 0 |
validate errors tyrsim_3gbn_2qzq_20Jan2010_14017_2 There are a couple of 2.05 bug reports in the 2.03 thread. You might want to sticky this thread and unsticky the 2.03 thread. Snags |
AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
Task 1731436 had a normal runtime, was a success and is valid; however there is an ERROR in stderr out: ERROR: unknown atom_name: ILE CG ERROR:: Exit from: src/core/chemical/ResidueType.cc line: 1382 AdeB |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
After 10 seconds, task 1733723 ERROR: ERROR: FragmentIO: could not open file aa1mq9A09_05.200_v1_3.gz ERROR:: Exit from: ....srccorefragmentFragmentIO.cc line: 258 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
A lot of validate error: 1734687 1734658 1734657 # cpu_run_time_pref: 14400 ====================================================== DONE :: 2 starting structures 13935.9 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish |
morse [E.R.] - BOINC.Italy Send message Joined: 26 Jan 10 Posts: 7 Credit: 66,816 RAC: 0 |
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AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
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Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
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Snagletooth Send message Joined: 4 May 07 Posts: 67 Credit: 134,427 RAC: 0 |
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coturnix Send message Joined: 5 Jan 10 Posts: 9 Credit: 196,185 RAC: 0 |
tyrsim_3gbn_2qsb_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735683, second task succeeded) tyrsim_3gbn_2qsv_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735685, second task succeeded) tyrsim_3gbn_2qvk_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735699, second task succeeded) dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_4 (Compute Error for both tasks, file_xfer_error) dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_7 (Compute Error for both tasks, file_xfer_error) dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_4 (Compute Error for both tasks, file_xfer_error) dckCFA_1sq2_3EGN_ppk_0002_foldit_ProteinInterfaceDesign_3Feb2010_14286_1 (Validate Error for both tasks) 1fxaA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 (Validate Error for task 1737477, second task succeeded) 1hz6A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 (Validate Error for task 1737482, second task succeeded) |
Snagletooth Send message Joined: 4 May 07 Posts: 67 Credit: 134,427 RAC: 0 |
one more validate error: 1l33A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_3_0 |
svincent Send message Joined: 4 Apr 08 Posts: 34 Credit: 51,768 RAC: 0 |
I have got compute errors on Mac OS X 10.6 for 4 tasks named 1738219 dckCFA_1sq2_3EGN_ppk_0002_foldit_ProteinInterfaceDesign_3Feb2010_14288_1_1 1738220 dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_2_1 1738221 dckCFA_1sq2_2OJ4_ppk_0050_ProteinInterfaceDesign_3Feb2010_14288_2_1 1738222 dckCFA_1sq2_3ce7_0044_foldit_ProteinInterfaceDesign_3Feb2010_14288_2_1 All seemed to complete OK but gave an error code at the end. </stderr_txt> <message> <file_xfer_error> <file_name>dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_2_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> My wingmen seemed to have similar problems |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
1533632dckCFA_1sq2_1s3g_0018_foldit_ProteinInterfaceDesign_3Feb2010_14288_2 errored out <core_client_version>6.6.28</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> ]]> validate errors: 1534306 1ifcA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 1534258 1l23A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_6 15343321shgA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 1534338200lA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 Win XP x64, 4CPU Xeon 2.83 GHz, 8GB RAM |
morse [E.R.] - BOINC.Italy Send message Joined: 26 Jan 10 Posts: 7 Credit: 66,816 RAC: 0 |
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AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
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Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
This Work unit was running for nearly 8 hours at 0.050% completed and 24 hours to go. It looks like it has then failed not long after I looked at it. The CPU recorded time says 22 minutes, so the WU was probably not using any CPU but the time was still ticking over. This WU |
coturnix Send message Joined: 5 Jan 10 Posts: 9 Credit: 196,185 RAC: 0 |
Lots of Compute Errors -- SIGSEGV (Linux) / SIGBUS (Mac) -- for example test_run1.1ttz.1ttz.IGNORE_THE_REST.c.1.0.pdb.pdb.JOB_14301_1 test_run1.1ttz.1ttz.IGNORE_THE_REST.c.4.1.pdb.pdb.JOB_14301_1 test_run1.1ttz.1ttz.IGNORE_THE_REST.c.3.4.pdb.pdb.JOB_14301_1 and many more. |
AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
File transfer errors!!! Task 1740222: <file_xfer_error> <file_name>igfhum_brub1_2dsrI_1ZZK_ProteinInterfaceDesign_12Feb2010_14321_1_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> Simmilar errors in tasks 1740267 and 1741847. AdeB |
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minirosetta 2.05
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