2.05 task 9gbnnotyr_3gbn_1e5k_9Jan2010_13807_1_0 finished succesully, validate error occured.
4CPU Xeon 2.83GHz, 8GB RAM, XP x64.

2.05 task run2.loopbuild_hb_t286__IGNORE_THE_REST_13813_9_1 errored out after 25s.
4CPU Xeon 2.83GHz, 8GB RAM, XP x64.

<core_client_version>6.10.24</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>

validate errors

tyrsim_3gbn_2qzq_20Jan2010_14017_2

There are a couple of 2.05 bug reports in the 2.03 thread. You might want to sticky this thread and unsticky the 2.03 thread.

Snags

Task 1731436 had a normal runtime, was a success and is valid; however there is an ERROR in stderr out:

After 10 seconds, task 1733723

ERROR: ERROR: FragmentIO: could not open file aa1mq9A09_05.200_v1_3.gz
ERROR:: Exit from: ..\..\src\core\fragment\FragmentIO.cc line: 258
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

A lot of validate error:
1734687
1734658
1734657


# cpu_run_time_pref: 14400
======================================================
DONE :: 2 starting structures 13935.9 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

Validate Error:

1735917
1735916

Task 1734255

Work units failing with "Validate Error", all show no errors in readout and all have produced successful decoy runs, why have they been marked as faulty?

See 1735252
1737376
1737381
1737630
1737631

Thanks
Conan.
____________

more validate errors:

dckCFA_1sq2_1xg8_0029_0002_ProteinInterfaceDesign_4Feb2010_14289_3

tyrsim_3gbn_2qsb_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735683, second task succeeded)
tyrsim_3gbn_2qsv_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735685, second task succeeded)
tyrsim_3gbn_2qvk_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735699, second task succeeded)
dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_4 (Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_7 (Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_4 (Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_3EGN_ppk_0002_foldit_ProteinInterfaceDesign_3Feb2010_14286_1 (Validate Error for both tasks)
1fxaA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 (Validate Error for task 1737477, second task succeeded)
1hz6A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 (Validate Error for task 1737482, second task succeeded)

one more validate error:
1l33A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_3_0

I have got compute errors on Mac OS X 10.6 for 4 tasks named

1738219 dckCFA_1sq2_3EGN_ppk_0002_foldit_ProteinInterfaceDesign_3Feb2010_14288_1_1
1738220 dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_2_1
1738221 dckCFA_1sq2_2OJ4_ppk_0050_ProteinInterfaceDesign_3Feb2010_14288_2_1
1738222 dckCFA_1sq2_3ce7_0044_foldit_ProteinInterfaceDesign_3Feb2010_14288_2_1

All seemed to complete OK but gave an error code at the end.

</stderr_txt>
<message>
<file_xfer_error>
<file_name>dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_2_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

My wingmen seemed to have similar problems

1533632dckCFA_1sq2_1s3g_0018_foldit_ProteinInterfaceDesign_3Feb2010_14288_2

errored out
<core_client_version>6.6.28</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>

validate errors:
1534306 1ifcA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7
1534258 1l23A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_6
15343321shgA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7
1534338200lA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7

Win XP x64, 4CPU Xeon 2.83 GHz, 8GB RAM

Validate Error:

1735938

Task 1738713 was marked Invalid. One of those 578 decoys must have been valid!

AdeB

This Work unit was running for nearly 8 hours at 0.050% completed and 24 hours to go.
It looks like it has then failed not long after I looked at it.
The CPU recorded time says 22 minutes, so the WU was probably not using any CPU but the time was still ticking over.

This WU
____________

Lots of Compute Errors -- SIGSEGV (Linux) / SIGBUS (Mac) -- for example

test_run1.1ttz.1ttz.IGNORE_THE_REST.c.1.0.pdb.pdb.JOB_14301_1
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.4.1.pdb.pdb.JOB_14301_1
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.3.4.pdb.pdb.JOB_14301_1

and many more.

File transfer errors!!!

Task 1740222:

Got this Error on five Work Units so far

ERROR: did not find topology_file: beta_lowE.top
ERROR:: Exit from: ..\..\src\protocols\topology_broker\TemplateJumpClaimer.cc line: 93
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

Work Units are 1745497
1745711
1745710
1745699
1745697

Also had

"Error Code 161"
"/file_xfer_error/"

on This WU

They all ran for only a short time before failing.
____________

Task 1746139

At the "stderr out":

<message>
Niepoprawna funkcja. (0x1) - exit code 1 (0x1)
</message>
(...)
ERROR: did not find topology_file: beta_lowE.top
ERROR:: Exit from: ..\..\src\protocols\topology_broker\TemplateJumpClaimer.cc line: 93
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


In the manager message window:

ERROR: Option file open failed for: relax_options_lr5_rama09_mix01_it03_run01_A_yfsong

1744059
1744057
1743941

1742734
1742963

<message>
<file_xfer_error> <file_name>igfhum_brub1_2dsrI_3FLG_ProteinInterfaceDesign_12Feb2010_14326_1_1_0
</file_name>
<error_code>-161</error_code>
</file_xfer_error>
</message>

1746875
<core_client_version>6.10.32</core_client_version>
<![CDATA[
<message>
Input file t286__boinc_corebuild_round2_rerun_sel_core_1.5.broker_corebuild_tex.boinc.flags missing or invalid: -119
</message>
]]>

Some recent failures on Mac OS X

1749862
1749890
1749891

all failed as follows:

ERROR: start_res != middle_res
ERROR:: Exit from: src/protocols/moves/KinematicMover.cc line: 132
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>

1749898

failed differently

SIGPIPE: write on a pipe with no reader
0 0x006e2839 SIGPIPE: write on a pipe with no reader
1 0x00338ace SIGPIPE: write on a pipe with no reader

etc.

1749893


- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x007E4651 read attempt to address 0x00000008

Engaging BOINC Windows Runtime Debugger...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x007E4651 read attempt to address 0x00000008

- Registers -
eax=00000000 ebx=00000000 ecx=017fe47c edx=07886300 esi=017f9d38 edi=00c08198
eip=007e4651 esp=017f8ffc ebp=017f9730
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010246

- Callstack -
ChildEBP RetAddr Args to Child
017f9730 0074785d 017fe47c 40d35fcd 017fe944 017fe47c minirosetta_2.05_windows_intelx!protocols::moves::KinematicMover::apply+0xf (d:\boinc_build\minirosetta_2.04\mini\src\protocols\moves\kinematicmover.cc:343)
017f9f70 006c9d40 017fe47c 40d3570d 078f28f0 00000010 minirosetta_2.05_windows_intelx!protocols::loops::LoopMover_Refine_KIC::apply+0x0 (d:\boinc_build\minirosetta_2.04\mini\src\protocols\loops\loopmover_kic.cc:780)
017fe33c 0068b980 017fe47c 40d32bc1 00000000 00000009 minirosetta_2.05_windows_intelx!protocols::loops::LoopRelaxMover::apply+0x0 (d:\boinc_build\minirosetta_2.04\mini\src\protocols\loops\looprelaxmover.cc:740)
017fed44 00405754 00000001 40d32551 00001db0 00000002 minirosetta_2.05_windows_intelx!protocols::loops::LoopRelax_main+0x0 (d:\boinc_build\minirosetta_2.04\mini\src\protocols\loops\loopbuild.cc:283)
017feedc 00405bb5 00000021 017feef4 000b2300 017feef4 minirosetta_2.05_windows_intelx!main+0x7 (d:\boinc_build\minirosetta_2.04\mini\src\apps\public\boinc\minirosetta.cc:197)
017ffef0 00418647 00400000 00000000 000b2342 0000000a minirosetta_2.05_windows_intelx!WinMain+0x0 (d:\boinc_build\minirosetta_2.04\mini\src\apps\public\boinc\minirosetta.cc:264)
017fff88 768b1174 7ffdf000 017fffd4 7716b3f5 7ffdf000 minirosetta_2.05_windows_intelx!__tmainCRTStartup+0x1c (f:\sp\vctools\crt_bld\self_x86\crt\src\crt0.c:324)
017fff94 7716b3f5 7ffdf000 47b5e9f0 00000000 00000000 kernel32!@BaseThreadInitThunk@12+0x0 (f:\sp\vctools\crt_bld\self_x86\crt\src\crt0.c:324)
017fffd4 7716b3c8 004186b0 7ffdf000 00000000 00000000 ntdll!___RtlUserThreadStart@8+0x0 (f:\sp\vctools\crt_bld\self_x86\crt\src\crt0.c:324)
017fffec 00000000 004186b0 7ffdf000 00000000 00000000 ntdll!__RtlUserThreadStart@8+0x0 (f:\sp\vctools\crt_bld\self_x86\crt\src\crt0.c:324)

*** Dump of thread ID 2892 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000

- Registers -
eax=03c2f880 ebx=00000000 ecx=00000005 edx=0000007c esi=03c2ff48 edi=00000000
eip=771564f4 esp=03c2ff04 ebp=03c2ff6c
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206

- Callstack -
ChildEBP RetAddr Args to Child
03c2ff00 77154c1c 753a1876 00000000 03c2ff48 4267f096 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
03c2ff04 753a1876 00000000 03c2ff48 4267f096 00000000 ntdll!_ZwDelayExecution@8+0x0 FPO: [2,0,0]
03c2ff6c 753a1818 00000064 00000000 03c2ff94 004088ab KERNELBASE!_SleepEx@8+0x0
03c2ff7c 004088ab 00000064 00000000 768b1174 00000000 KERNELBASE!_Sleep@4+0x0
03c2ff88 768b1174 00000000 03c2ffd4 7716b3f5 00000000 minirosetta_2.05_windows_intelx!timer_thread+0x0 (d:\boinc_build\minirosetta_2.04\mini\external\boinc\api\boinc_api.cpp:922)
03c2ff94 7716b3f5 00000000 4508e9f0 00000000 00000000 kernel32!@BaseThreadInitThunk@12+0x0 (d:\boinc_build\minirosetta_2.04\mini\external\boinc\api\boinc_api.cpp:922)
03c2ffd4 7716b3c8 004088a0 00000000 00000000 00000000 ntdll!___RtlUserThreadStart@8+0x0 (d:\boinc_build\minirosetta_2.04\mini\external\boinc\api\boinc_api.cpp:922)
03c2ffec 00000000 004088a0 00000000 00000000 fb8de5f8 ntdll!__RtlUserThreadStart@8+0x0 (d:\boinc_build\minirosetta_2.04\mini\external\boinc\api\boinc_api.cpp:922)

*** Dump of thread ID 3452 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000

- Registers -
eax=094dfe28 ebx=075d7900 ecx=094de734 edx=000000b9 esi=094dfdfc edi=00000000
eip=771564f4 esp=094dfdb8 ebp=094dfe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206

- Callstack -
ChildEBP RetAddr Args to Child
094dfdb4 77154c1c 753a1876 00000000 094dfdfc 48e8f1da ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
094dfdb8 753a1876 00000000 094dfdfc 48e8f1da 000000bb ntdll!_ZwDelayExecution@8+0x0 FPO: [2,0,0]
094dfe20 753a1818 000007d0 00000000 768aef66 006a42d1 KERNELBASE!_SleepEx@8+0x0
094dfe30 006a42d1 000007d0 48e136cd 00000000 075d7908 KERNELBASE!_Sleep@4+0x0
094dff40 006a44e7 00000000 00414e2c 00000000 48e1370d minirosetta_2.05_windows_intelx!protocols::boinc::watchdog::main_watchdog+0x0 (d:\boinc_build\minirosetta_2.04\mini\src\protocols\boinc\watchdog.cc:316)
094dff48 00414e2c 00000000 48e1370d 00000000 075d7908 minirosetta_2.05_windows_intelx!protocols::boinc::watchdog::main_watchdog_windows+0x7 (d:\boinc_build\minirosetta_2.04\mini\src\protocols\boinc\watchdog.cc:94)
094dff80 00414ed1 00000000 768b1174 075d7908 094dffd4 minirosetta_2.05_windows_intelx!_callthreadstartex+0x6 (f:\sp\vctools\crt_bld\self_x86\crt\src\threadex.c:348)
094dff88 768b1174 075d7908 094dffd4 7716b3f5 075d7908 minirosetta_2.05_windows_intelx!_threadstartex+0x5 (f:\sp\vctools\crt_bld\self_x86\crt\src\threadex.c:326)
094dff94 7716b3f5 075d7908 4f87e9f0 00000000 00000000 kernel32!@BaseThreadInitThunk@12+0x0 (f:\sp\vctools\crt_bld\self_x86\crt\src\threadex.c:326)
094dffd4 7716b3c8 00414e52 075d7908 00000000 00000000 ntdll!___RtlUserThreadStart@8+0x0 (f:\sp\vctools\crt_bld\self_x86\crt\src\threadex.c:326)
094dffec 00000000 00414e52 075d7908 00000000 09690000 ntdll!__RtlUserThreadStart@8+0x0 (f:\sp\vctools\crt_bld\self_x86\crt\src\threadex.c:326)


*** Debug Message Dump ****

Had the following Error message

ERROR: start_res != middle_res
ERROR:: Exit from: ..\..\src\protocols\moves\KinematicMover.cc line: 132
BOINC:: Error reading and gzipping output datafile: default.out

It was on 1749596
1749597
1749598
1749871

Happened after only a couple of hundred seconds.
____________

1544269
1544268
1544270
1544271

After different calculation times, all the same error:

ERROR: [ERROR] Unable to open constraints file: aqp9_.dist_csts
ERROR:: Exit from: ..\..\src\core\scoring\constraints\ConstraintIO.cc line: 332
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

1544269
1544268
1544270
1544271

After different calculation times, all the same error:

ERROR: [ERROR] Unable to open constraints file: aqp9_.dist_csts
ERROR:: Exit from: ..\..\src\core\scoring\constraints\ConstraintIO.cc line: 332
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

A lot of validate error

1755041
1755043
1755051
etc, etc, etc

I had the following error message:
1757476

SIGSEGV: segmentation violation
Stack trace (17 frames):
[0x96c49b3]
[0x96ee888]
[0xf7f90400]
[0x8d2a923]
[0x8d2aaf2]
[0x8d6efb3]
[0x8c49cb5]
[0x8f95cf0]
[0x88b5050]
[0x88b97a6]
[0x873763f]
[0x812a54a]
[0x812b82d]
[0x86aa16b]
[0x8049a26]
[0x974c15c]
[0x8048121]

Exiting...
------------//------------
and:
1757331

*** glibc detected *** free(): invalid pointer: 0xec562de1 ***
SIGABRT: abort called
Stack trace (20 frames):
[0x96c49b3]
[0x96ee888]
[0xf7fef400]
[0x97532d4]
[0x9768fc2]
[0x976def3]
[0x976e3bb]
[0x973e0c1]
[0x81bdfb1]
[0x902371b]
[0x8486f0d]
[0x900bc5c]
[0x8f9b5d9]
[0x8627747]
[0x812a167]
[0x812b82d]
[0x86aa16b]
[0x8049a26]
[0x974c15c]
[0x8048121]

Exiting...


Other WUs in the same machine (Linux have similar errors:

1758427
1757675

100% validate errors (11 out of 11) using win xp and the hard drive is going continuously as it processes 4 units at a time. The work units are fcDE-W3.....

I wouldn't be surprised if there is going to be a chorus of complaints from the Rosetta users about the way these fcDE-W3.. units are hogging the hard drive. I have found that if you want to open files, access the internet etc you have to put boinc on snooze because the hard drive is otherwise occupied. The task manager shows the processors changing from 0 to 100% at very frequent intervals. In the past the indicator show a steady 100%. To top it all, the validation error is still staying at a constant 100%.

While the validate errors seem to have been corrected (at least the ones I am processing now), they all have quite short run times and ALL of them process 10,000 Decoys then finish.

This is a new record, it is the most decoys I have seen since I started this project (I certain I think).

Looks like this is an inbuilt maximum number of decoys that can be processed for a work unit.
____________

While the validate errors seem to have been corrected (at least the ones I am processing now)

The "fcDE-W3" WUs have something wrong.
The graphics show only one structure of three and the stage and energy are always at "zero".

A gunn-fragments error:

1759776

ERROR: ct == final_atoms
ERROR:: Exit from: ..\..\src\core\scoring\rms_util.cc line: 397
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


and,usualy, a tons of validate error in fcDE-W3 wu.....

thanks for pointing this one out. We are working on a fix for those jobs.

As usual, validate errors
1765734
1765727
1765728

Most of errors are on my Phaenom II X4 (and windows 7)....problems with L3 cache? SSE extension?
No problems with Turion X2 (windows 7) or Amd Mobile single core (windows xp).

Quite a few placestub_alt_denovo_1zvy_****_ProteinInterfaceDesign_19Mar2010_14558_*** work units report

ERROR: Value of inactive option accessed: -holes:dalphaball
(e.g. placestub_alt_denovo_1zvy_2amh_ProteinInterfaceDesign_19Mar2010_14558_2)

validate error for
placestub_alt_denovo_1zvy_2r0j_ProteinInterfaceDesign_19Mar2010_14558_1_0

50% (6 out of 12) of these work units have failed with this error

compute error on my mac: placestub_alt_denovo_1zvy_2quo_ProteinInterfaceDesign_19Mar2010_14558_2_0
ERROR: Value of inactive option accessed: -holes:dalphaball
SIGSEGV: segmentation violation

Result 1773378

Got stuck and continued for 4 hours; usually tasks are 1 hour. Error is crash.

Intel Mac OSX 10.4

As usual, between 80% and 90% of validate error(after a correct run) on placestub_alt_denovo_*
1767609
1767608
1767608
etc

I hope validate errors will resolve with 2.06 version.....

I am new to this project and I must say that I am far from impressed so far... The bulk of the work units I have run so far have completed fine only to be tagged as VALIDATE ERROR ...How can you justify doing valid work only to have it rejected by the server ??

This site is designed to find and rectify any problems before the work units are sent to R@H. Don't expect to have all the work units working properly. If they do then it is a bonus!

I am new to this project and I must say that I am far from impressed so far... The bulk of the work units I have run so far have completed fine only to be tagged as VALIDATE ERROR ...How can you justify doing valid work only to have it rejected by the server ??

1774657
1776020
1776022

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ..\..\src\apps\public\boinc\minirosetta.cc line: 137
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

I checked some validate errors and I found that happens in WUs that has been suspended by the BOINC manager (6.10.36) to let other WUs start.
This is a common problem that I see in the recent versions (6.X). The BOINC manager doesn’t let finish the WU, but suspended it to start another of the same project.
I have 10 RALPH WUs that has been suspended at 60-80% (taking a lot of memory and making the computer to be really slow and the BOINC manager to crash sometimes) and then, when resumed, they finished rapidly and give validate error.
In the other PC with version 5.10.45 of the BOINC manager, I haven't such a problem and no validate error (on a total of 27 WUs).

Someone other can confirm that?

I have only 6.10.36 clients, but now i download an older version and i try it