minirosetta beta 3.50-3.52 apps

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cmt.explorer

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Message 5783 - Posted: 15 Aug 2014, 8:59:20 UTC - in response to Message 5768.  
Last modified: 15 Aug 2014, 9:00:18 UTC

With 3.53 I can now crunch WUs - thank you. See public results at wuprop.boinc-af.org/results/arm.py (ralph@home).
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Profile [VENETO] boboviz

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Message 5804 - Posted: 21 Dec 2014, 10:53:10 UTC

Any news? No new application??
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Profile [VENETO] boboviz

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Message 5806 - Posted: 28 Dec 2014, 8:10:46 UTC

All errors
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -corrections:score:hb_sp2_peak_heigh_above_trough not found in command line top-level context
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Werinbert

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Message 5807 - Posted: 4 Jan 2015, 11:36:22 UTC - in response to Message 5806.  

All errors
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -corrections:score:hb_sp2_peak_heigh_above_trough not found in command line top-level context



The same problem is still around. I got a hand full of tasks and they all errored.
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Profile [VENETO] boboviz

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Message 5810 - Posted: 25 Feb 2015, 12:39:56 UTC

All errors:

ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
ERROR:: Exit from: ..\..\..\src\protocols\abinitio\AbrelaxApplication.cc line: 488
std::cerr: Exception was thrown:

[ERROR] EXCN_utility_exit has been thrown from: ..\..\..\src\protocols\abinitio\AbrelaxApplication.cc line: 488
ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
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zioriga

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Message 5811 - Posted: 25 Feb 2015, 18:22:42 UTC - in response to Message 5810.  

This error:

dock_placestub_0_input_0181_0001_ss1_2_ss2_2_ss3_1_ss4_2_ss5_3_0001_0001_vegf_ProteinInterfaceDesign_25Feb2015_20229_18_0 finished
2/25/2015 7:13:27 PM | ralph@home | Output file dock_placestub_0_input_0181_0001_ss1_2_ss2_2_ss3_1_ss4_2_ss5_3_0001_0001_vegf_ProteinInterfaceDesign_25Feb2015_20229_18_0_0 for task dock_placestub_0_input_0181_0001_ss1_2_ss2_2_ss3_1_ss4_2_ss5_3_0001_0001_vegf_ProteinInterfaceDesign_25Feb2015_20229_18_0 absent


after a bit more than a minute
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Profile Conan
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Message 5812 - Posted: 25 Feb 2015, 20:07:59 UTC

Received this error on Task 3335547


ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
ERROR:: Exit from: src/protocols/abinitio/AbrelaxApplication.cc line: 488
std::cerr: Exception was thrown:


[ERROR] EXCN_utility_exit has been thrown from: src/protocols/abinitio/AbrelaxApplication.cc line: 488
ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!

Conan

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TPCBF

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Message 5813 - Posted: 25 Feb 2015, 21:59:31 UTC - in response to Message 5812.  

Received this error on Task 3335547


ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
ERROR:: Exit from: src/protocols/abinitio/AbrelaxApplication.cc line: 488
std::cerr: Exception was thrown:


[ERROR] EXCN_utility_exit has been thrown from: src/protocols/abinitio/AbrelaxApplication.cc line: 488
ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!

Conan
Same here. Got about a dozen or so WUs and they crap out faster than you can shake a stick at... :-(

Ralf
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Profile [VENETO] boboviz

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Message 5814 - Posted: 25 Feb 2015, 22:09:13 UTC

Same errors as above (and as Conan) on all my pcs
Please, stop this batch
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Message 5815 - Posted: 26 Feb 2015, 0:15:15 UTC - in response to Message 5813.  

Received this error on Task 3335547


ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
ERROR:: Exit from: src/protocols/abinitio/AbrelaxApplication.cc line: 488
std::cerr: Exception was thrown:


[ERROR] EXCN_utility_exit has been thrown from: src/protocols/abinitio/AbrelaxApplication.cc line: 488
ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!

Conan
Same here. Got about a dozen or so WUs and they crap out faster than you can shake a stick at... :-(

Ralf


Similar problem here, but about 25 failed workunits so far, spread over two computers. The error message suggests that either an input file used by most of today's workunits is corrupted, or the command line that tells the application to use that file is defective.
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Profile [VENETO] boboviz

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Message 5816 - Posted: 26 Feb 2015, 9:39:04 UTC
Last modified: 26 Feb 2015, 9:39:35 UTC

Today, again
3340497

Please, stop this batch!!
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Profile Conan
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Message 5817 - Posted: 26 Feb 2015, 11:08:01 UTC

New record for me I think, 100% failures with no successes after many dozens of tasks.

This batch is fundamentally flawed and the parameters need resetting.

Conan
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Message 5818 - Posted: 26 Feb 2015, 19:51:46 UTC

Computation error after 2 to 4 minutes in each and every of approx. 500 workunits.
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Message 5819 - Posted: 26 Feb 2015, 20:51:03 UTC - in response to Message 5818.  

Computation error after 2 to 4 minutes in each and every of approx. 500 workunits.


Waste of time. I've stopped the download on all my cpus....
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candido

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Message 5820 - Posted: 26 Feb 2015, 22:21:39 UTC - in response to Message 5819.  

Yes, at the moment I can't even download to check whether the problem has been solved on new work units... something like this : You have reached a daily limit of x work units, where x varies from time to time (!?)
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Message 5821 - Posted: 27 Feb 2015, 1:29:00 UTC

Two kinds of wus:

- dock_placestub - all ending with computation error
- zibochen - running normal at the moment
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candido

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Message 5822 - Posted: 27 Feb 2015, 3:26:22 UTC

I want zibochen!!!
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Profile [VENETO] boboviz

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Message 5823 - Posted: 1 Mar 2015, 14:02:10 UTC

Same error, again....
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Message 5824 - Posted: 5 Mar 2015, 6:10:56 UTC

Validate error for all tasks returned today.

It looks like being on the server side, units crunch ok.

Suspended until solved.
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Message 5825 - Posted: 5 Mar 2015, 7:18:54 UTC - in response to Message 5824.  

Validate error for all tasks returned today.

It looks like being on the server side, units crunch ok.

confirmed --> e.g. http://ralph.bakerlab.org/workunit.php?wuid=2963714
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Message boards : RALPH@home bug list : minirosetta beta 3.50-3.52 apps



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