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Rosetta Mini Beta 3.53

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Message boards : RALPH@home bug list : Rosetta Mini Beta 3.53

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Profile [VENETO] boboviz

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Message 5741 - Posted 16 Jul 2014 6:16:39 UTC

    All wus without problems (up to now)
    I'm crunching also a wu on my smartphone...

    Profile [VENETO] boboviz

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    Message 5742 - Posted 16 Jul 2014 13:11:21 UTC - in response to Message 5741.

      Last modified: 16 Jul 2014 13:13:20 UTC

      I'm crunching also a wu on my smartphone...


      Wu at 11% of computation restarts from 0%. This happens 3 times...at the end i kill this wu.
      This. It's a problem of disk space? Ram?

      CPU type ARM
      ARMv7 Processor rev 2 (v7l)
      Number of CPUs 1
      Operating System Android 2.6.35.7-1206759
      Memory 350.68 MB
      Cache -0 KB
      Swap space 0 MB
      Total disk space 1.07 GB
      Free Disk Space 0.5 GB
      Measured floating point speed 460.08 million ops/sec
      Measured integer speed 1517.74 million ops/sec

      TPCBF

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      Message 5743 - Posted 16 Jul 2014 19:17:23 UTC - in response to Message 5742.

        Yeah, those WUs seem to have a fairly large (low) restart threshold. Got two jobs on my laptop, running for about an hour and when I restarted my laptop today, they both started at 0% again. Theoretically they should finish before I have to leave and hit the road again, hope that they don't start all over again when I get back.

        Ralf

        TPCBF

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        Message 5746 - Posted 19 Jul 2014 0:23:59 UTC - in response to Message 5743.

          Last modified: 19 Jul 2014 0:25:01 UTC

          Strange behaviour of the last set of (4) WUs. They are running now for a bit more than 2h, showing around 24% done but only a few odd minutes of elapsed runtime, and only a few (23) seconds of CPU time and supposedly no checkpoint reached yet... :?
          Running on Windows 8.1/64, with 6GB of RAM and not much else going on on the machine right now...

          Anyone there and care to explain?

          Ralf

          sgaboinc

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          Message 5748 - Posted 19 Jul 2014 1:33:19 UTC

            Last modified: 19 Jul 2014 1:40:17 UTC

            recent 8 tasks on 3.52 completed without errors.
            i did a project reset and aborted the next set of tasks (as the 'old' binaries for 3.52 gets downloaded again), note it's not due to any errors.

            should my client download 3.53 beta rather than 3.52 as it seemed both versions appear in apps?
            http://ralph.bakerlab.org/apps.php

            it seemed that the current set of tasks downloads the associated 3.52 binary rather than 3.53

            TPCBF

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            Message 5750 - Posted 19 Jul 2014 4:00:35 UTC - in response to Message 5748.

              ok, the 4 WUs that I got have by now repeatedly restarted from scratch, even at though at one point showing almost 30% done.
              And I noticed that those WUs are trashing the hard drive like crazy...

              Ralf

              Profile [VENETO] boboviz

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              Message 5752 - Posted 19 Jul 2014 21:46:21 UTC - in response to Message 5750.

                ok, the 4 WUs that I got have by now repeatedly restarted from scratch, even at though at one point showing almost 30% done.


                Same here on my notebook, restart and restart and restart....

                sgaboinc

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                Message 5753 - Posted 20 Jul 2014 7:22:40 UTC

                  Last modified: 20 Jul 2014 7:45:05 UTC

                  ok i found the app files at http://ralph.bakerlab.org/download/

                  as it turns out on ralph 3.52 and 3.53 beta seemed to be the same files


                  md5 sum app
                  dcb06f5cf47637f6af2759a40c5b0cdb minirosetta_3.52_x86_64-pc-linux-gnu
                  dcb06f5cf47637f6af2759a40c5b0cdb minirosetta_beta_3.53_x86_64-pc-linux-gnu


                  and this same version (supposedly beta) is apparently running in 'production' rosetta@home

                  md5 sum app
                  dcb06f5cf47637f6af2759a40c5b0cdb ../boinc.bakerlab.org_rosetta/minirosetta_3.52_x86_64-pc-linux-gnu


                  would admin like to confirm/clarify this?

                  Profile dekim
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                  Message 5777 - Posted 2 Aug 2014 23:56:26 UTC

                    Yes, they are the same version with the exception of the Android app. We are mainly trying to get some data from android platforms to get an idea of success rates etc.
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                    Message 5778 - Posted 3 Aug 2014 0:52:50 UTC - in response to Message 5777.

                      I have yet to receive ANY work for my Nexus 7 Android tablet HOST# 32700 since I attached it on 13 Jun 2014 13:56:02 UTC.
                      I posted about this here but never received any response.

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                      Profile [VENETO] boboviz

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                      Message 5779 - Posted 4 Aug 2014 6:32:25 UTC - in response to Message 5777.

                        Yes, they are the same version with the exception of the Android app. We are mainly trying to get some data from android platforms to get an idea of success rates etc.


                        Uh, ok, now i understand why is not optimized very well for android.
                        Hope for future versione...

                        Profile Conan
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                        Message 5785 - Posted 17 Aug 2014 13:47:13 UTC

                          Had this one fail with this error message

                          WU 3128681

                          ERROR: Fullatom mismatch in checkpointer.
                          ERROR:: Exit from: ..\..\..\src\protocols\checkpoint\CheckPointer.cc line: 379

                          ERROR: core::pose::symmetry::is_symmetric( native_pose ) || core::pose::symmetry::is_symmetric( pose )
                          ERROR:: Exit from: ..\..\..\src\core\scoring\rms_util.cc line: 1217
                          std::cerr: Exception was thrown:


                          [ERROR] EXCN_utility_exit has been thrown from: ..\..\..\src\core\scoring\rms_util.cc line: 1217
                          ERROR: core::pose::symmetry::is_symmetric( native_pose ) || core::pose::symmetry::is_symmetric( pose )

                          Conan

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                          Profile [VENETO] boboviz

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                          Message 5788 - Posted 4 Sep 2014 9:14:21 UTC

                            Graphic is black on all relax_2 wus

                            Profile [VENETO] boboviz

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                            Message 5789 - Posted 4 Sep 2014 13:56:33 UTC

                              3303788

                              Unpacking data: ../../projects/ralph.bakerlab.org/3cx2.1.ralph_test_bbonly.zip
                              Setting database description ...
                              Setting up checkpointing ...
                              Setting up graphics native ...
                              BOINC:: Worker startup.
                              Starting watchdog...
                              Watchdog active.
                              # cpu_run_time_pref: 7200

                              ERROR: Can't create a polymer bond after residue 31 due to incompatible type: ALA_p:CtermTruncation
                              ERROR:: Exit from: ..\..\..\src\core\conformation\Conformation.cc line: 643
                              std::cerr: Exception was thrown:


                              [ERROR] EXCN_utility_exit has been thrown from: ..\..\..\src\core\conformation\Conformation.cc line: 643
                              ERROR: Can't create a polymer bond after residue 31 due to incompatible type: ALA_p:CtermTruncation

                              Profile [VENETO] boboviz

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                              Message 5790 - Posted 4 Sep 2014 14:18:26 UTC - in response to Message 5789.


                                ERROR: Can't create a polymer bond after residue 31 due to incompatible type: ALA_p:CtermTruncation
                                ERROR:: Exit from: ..\..\..\src\core\conformation\Conformation.cc line: 643
                                std::cerr: Exception was thrown:

                                [ERROR] EXCN_utility_exit has been thrown from: ..\..\..\src\core\conformation\Conformation.cc line: 643
                                ERROR: Can't create a polymer bond after residue 31 due to incompatible type: ALA_p:CtermTruncation


                                Same here and here

                                Profile [VENETO] boboviz

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                                Message 5791 - Posted 4 Sep 2014 21:20:50 UTC

                                  New message on my manager on Windows 8.1 64 bit

                                  Rosetta Mini Beta is not available for your type of computer.

                                  Werinbert

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                                  Message 5792 - Posted 4 Sep 2014 21:21:22 UTC

                                    I am currently running a bunch of WUs already on two windows machines. None the less, I am getting a "Rosetta Mini Beta is not available for your type of computer." message when my computers are looking for new work.

                                    Could anyone elaborate? Has there been some sort of change in the last hour or so?

                                    Profile Conan
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                                    Message 5793 - Posted 4 Sep 2014 22:42:28 UTC

                                      Last modified: 4 Sep 2014 22:50:20 UTC

                                      Had 3 failed work units on Linux 64 Bit

                                      This error on Result 3296207

                                      ERROR: Can't create a polymer bond after residue 9 due to incompatible type: ASP_p:CtermTruncation
                                      ERROR:: Exit from: src/core/conformation/Conformation.cc line: 643
                                      std::cerr: Exception was thrown:

                                      [ERROR] EXCN_utility_exit has been thrown from: src/core/conformation/Conformation.cc line: 643
                                      ERROR: Can't create a polymer bond after residue 9 due to incompatible type: ASP_p:CtermTruncation

                                      This error on Result 3300622

                                      ERROR: Can't create a polymer bond after residue 52 due to incompatible type: VAL_p:CtermTruncation
                                      ERROR:: Exit from: src/core/conformation/Conformation.cc line: 643
                                      std::cerr: Exception was thrown:

                                      [ERROR] EXCN_utility_exit has been thrown from: src/core/conformation/Conformation.cc line: 643
                                      ERROR: Can't create a polymer bond after residue 52 due to incompatible type: VAL_p:CtermTruncation

                                      This error on Result 3304866

                                      ERROR: Can't create a polymer bond after residue 73 due to incompatible type: ALA_p:CtermTruncation
                                      ERROR:: Exit from: src/core/conformation/Conformation.cc line: 643
                                      std::cerr: Exception was thrown:

                                      [ERROR] EXCN_utility_exit has been thrown from: src/core/conformation/Conformation.cc line: 643
                                      ERROR: Can't create a polymer bond after residue 73 due to incompatible type: ALA_p:CtermTruncation

                                      All to do with "relax_xxxx.x_ralph_test_bbonly_" type work units (where xxxx.x changes).

                                      Conan
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                                      Message 5794 - Posted 4 Sep 2014 22:53:34 UTC - in response to Message 5791.

                                        New message on my manager on Windows 8.1 64 bit
                                        Rosetta Mini Beta is not available for your type of computer.


                                        I am also getting this message on my Windows XP 32 Bit computers, and can't get any work.

                                        Conan
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                                        Profile dekim
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                                        Message 5795 - Posted 4 Sep 2014 23:02:22 UTC

                                          I've deprecated the minirosetta_beta app on all platforms except for android to facilitate debugging the android app.
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                                          Profile [VENETO] boboviz

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                                          Message 5796 - Posted 5 Sep 2014 17:53:39 UTC - in response to Message 5795.

                                            I've deprecated the minirosetta_beta app on all platforms except for android to facilitate debugging the android app.


                                            White flag for me. My smartphone has only 1gb of hd...

                                            Profile [VENETO] boboviz

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                                            Message 5808 - Posted 4 Feb 2015 13:40:32 UTC

                                              Is there news?
                                              3.52 version of app is 8 months ago.
                                              Android version is deprecate.
                                              Please, give us new wus to test

                                              Message boards : RALPH@home bug list : Rosetta Mini Beta 3.53


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