Rosetta_beta 4.0+

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Profile [VENETO] boboviz

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Message 6230 - Posted: 20 Nov 2017, 9:17:21 UTC - in response to Message 6226.  

Sorry! I've canceled this test batch. Looks like a database issue I'll have to troubleshoot.


News??
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Message 6231 - Posted: 21 Nov 2017, 1:45:14 UTC

Finally finished the builds. It took some time because we updated the source again to include additional bug fixes. I also updated the android version. We'll submit some tests soon.
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Joe

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Message 6232 - Posted: 21 Nov 2017, 5:19:33 UTC - in response to Message 6231.  

Happy to see work but unfortunately everything erring out

******

stderr out
<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
��������ȷ�� (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2011-10-23 3:34:58:] :: BOINC:: Initializing ... ok.
[2011-10-23 3:34:58:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev42272.zip
Unpacking WU data ...
Unpacking data: ../../projects/ralph.bakerlab.org/3essA_cen.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...

ERROR: [ERROR] Unable to open constraints file: 3essA.cst
ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 402
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>
Validate state Invalid
Claimed credit 0.14096248528502
Granted credit 0
application version 3.14
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Joe

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Message 6233 - Posted: 21 Nov 2017, 5:27:52 UTC - in response to Message 6232.  

Had a few that validated

stderr out
<core_client_version>7.6.33</core_client_version>
<![CDATA[
<stderr_txt>
command: projects/ralph.bakerlab.org/rosetta_beta_4.06_windows_x86_64.exe -use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1tulA.pdb -in::file::fasta ab_12_01__vall_2011__1tulA.fasta -psipred_ss2 ab_12_01__vall_2011__1tulA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1tulA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1tulA.200.3mers.index -fragA ab_12_01__vall_2011__1tulA.200.9mers.index -fragB ab_12_01__vall_2011__1tulA.200.3mers.index -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2628579
Starting watchdog...
Watchdog active.
======================================================
DONE :: 1 starting structures 3515.09 cpu seconds
This process generated 24 decoys from 24 attempts
======================================================
BOINC :: WS_max 3.37977e+08

BOINC :: Watchdog shutting down...
21:23:56 (3312): called boinc_finish(0)

</stderr_txt>
]]>
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Profile [VENETO] boboviz

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Message 6234 - Posted: 21 Nov 2017, 6:45:47 UTC - in response to Message 6232.  

Happy to see work but unfortunately everything erring out

stderr out
<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>


It's VERY old version of boinc client.
Maybe this is a problem
Try to update this, if you can
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Message 6235 - Posted: 21 Nov 2017, 6:46:05 UTC - in response to Message 6231.  

Finally finished the builds. It took some time because we updated the source again to include additional bug fixes. I also updated the android version. We'll submit some tests soon.


Welcome back!!
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Joe

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Message 6236 - Posted: 21 Nov 2017, 9:19:57 UTC - in response to Message 6234.  

Happy to see work but unfortunately everything erring out

stderr out
<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>


It's VERY old version of boinc client.
Maybe this is a problem
Try to update this, if you can


Nope I won't be updating the client lol..

What I have works fine for every other project I run...with boinc newer is definitely not better
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Message 6237 - Posted: 21 Nov 2017, 10:16:28 UTC - in response to Message 6236.  
Last modified: 21 Nov 2017, 10:17:18 UTC

What I have works fine for every other project I run...with boinc newer is definitely not better


The 7.8.x release has some problems, but 7.6.x or 7.4.x versions have not problems and you can download and install it. These versions have a lot of new features (for example, virtualbox support or OpenCl support), bugfix, security patch, etc.

https://boinc.berkeley.edu/download_all.php

I repeat: maybe these is not the problem of this ralph release, but i suggest you to upgrade
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Message 6238 - Posted: 21 Nov 2017, 18:39:42 UTC - in response to Message 6232.  

Not sure why but this error is from a very old app version.
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Message 6239 - Posted: 21 Nov 2017, 20:25:33 UTC

I seems that there are lots of units to download but I can't downoload any in my hosts (linux), is it only for windows?
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Message 6240 - Posted: 21 Nov 2017, 21:31:56 UTC - in response to Message 6239.  

I seems that there are lots of units to download but I can't downoload any in my hosts (linux), is it only for windows?


I cannot download wu for my Windows 10 pcs
It's only for linux??

:-P
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Message 6241 - Posted: 21 Nov 2017, 23:11:26 UTC - in response to Message 6240.  

I have received some tasks on Linux and Android. No Windows tasks though.
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Message 6242 - Posted: 22 Nov 2017, 4:51:08 UTC

Same as previous (http://ralph.bakerlab.org/forum_thread.php?id=586&nowrap=true#6224) - all wus have failed immediately after start.
Actually it even can not start - BOINC fails to launch R@H process.
.....................
22/11/2017 05:26:23 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:24 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:24 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:25 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:25 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:27 | ralph@home | Computation for task ab_12_01__vall_2011_2ci2I_vall_2011_9mers_3mers_20693_63_0 finished
22/11/2017 05:26:27 | ralph@home | Output file ab_12_01__vall_2011_2ci2I_vall_2011_9mers_3mers_20693_63_0_0 for task ab_12_01__vall_2011_2ci2I_vall_2011_9mers_3mers_20693_63_0 absent
22/11/2017 05:26:29 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:30 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:30 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:31 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:31 | ralph@home | [error] Process creation failed: (unknown error) - error code 193 (0xc1)
22/11/2017 05:26:34 | ralph@home | Computation for task cp11d2v1_cpp_11_D2_v1_SAVE_ALL_OUT_20695_1177_0 finished
22/11/2017 05:26:34 | ralph@home | Output file cp11d2v1_cpp_11_D2_v1_SAVE_ALL_OUT_20695_1177_0_0 for task cp11d2v1_cpp_11_D2_v1_SAVE_ALL_OUT_20695_1177_0 absent
..............
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Message 6243 - Posted: 22 Nov 2017, 8:09:26 UTC - in response to Message 6241.  

I have received some tasks on Linux and Android. No Windows tasks though.



During the night (in Italy) some wus for Windows.
Seems a "mixed" queue
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Message 6244 - Posted: 22 Nov 2017, 8:29:06 UTC
Last modified: 22 Nov 2017, 8:29:52 UTC

Credit issue, I have had 2 work units that only received the credit they claimed, and no adjustment for final credit amount.

See Result 4178106
Also Result=4178099

Or did these two work units just not do enough work?

Conan
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Message 6245 - Posted: 24 Nov 2017, 13:06:10 UTC - in response to Message 6243.  

During the night (in Italy) some wus for Windows.
Seems a "mixed" queue


Now only Android wus...
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Message 6499 - Posted: 19 Feb 2018, 19:10:23 UTC

It's not a real bug, it's only a strange behaviour.
I've set my default runtime to 6hs and i receive between 250 to 350 point per wu.
Es: 4199839
====================================================
DONE :: 1 starting structures 21385.7 cpu seconds
This process generated 19 decoys from 19 attempts
====================================================

Today i recive 50 points for the same time
Es: 4199857
===================================================
DONE :: 1 starting structures 21093.6 cpu seconds
This process generated 18 decoys from 18 attempts
===================================================
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Message 6502 - Posted: 5 Mar 2018, 19:30:47 UTC

I'm working on the rosetta_beta Mac OSX version since there appears to be issues with the latest build. There may be various rounds of version updates. I just added 4.09.
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Message 6506 - Posted: 24 Mar 2018, 10:35:05 UTC

All my 4.07 work units have failed, eith immediately (Windows XP 32 bit) or after 1 minute (Linux 64 bit)

I get Can't create Process on Windows (doesn't appear to be anti-virus related)
Or Process got Signal 11 on Linux.

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Message 6507 - Posted: 25 Mar 2018, 14:31:27 UTC - in response to Message 6506.  

Same here.

Win XP 32 bit. Host ID 32648

11 tasks, 11 failures with Exit status -185 (0xFFFFFF47) ERR_RESULT_START

Application version	Rosetta v4.07 
windows_intelx86

Stderr output
<core_client_version>7.9.2</core_client_version>
<![CDATA[
<message>
couldn't start app: CreateProcess() failed - (unknown error)</message>
]]>


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