Message boards : RALPH@home bug list : Bug reports for Ralph 5.37 through 5.40
Author | Message |
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Chu Volunteer moderator Project developer Project scientist Send message Joined: 26 Sep 06 Posts: 61 Credit: 12,545 RAC: 0 |
If all goes well with this update, we'll probably update the main application on Monday. Look for some interesting new workunits with multiple copies of a protein -- these are attempt to simulate fibril formation. |
Pieface Send message Joined: 16 Feb 06 Posts: 64 Credit: 203,513 RAC: 0 |
Hmmm. here's one I haven't seen before: resid 312317 <core_client_version>5.4.11</core_client_version> <message> The system cannot find the path specified. (0x3) - exit code 3 (0x3) </message> <stderr_txt> # random seed: 2872198 # cpu_run_time_pref: 14400 </stderr_txt> |
anders n Send message Joined: 16 Feb 06 Posts: 166 Credit: 131,419 RAC: 0 |
This one died just when it was about to start working. (I was looking at grafics) https://ralph.bakerlab.org/result.php?resultid=312289 Anders n |
anders n Send message Joined: 16 Feb 06 Posts: 166 Credit: 131,419 RAC: 0 |
This one never got past 31 sek. Did that 5 times then died. Same thing with looking at grafics as not looking at it. https://ralph.bakerlab.org/result.php?resultid=312654 Anders n |
Trog Dog Send message Joined: 8 Aug 06 Posts: 38 Credit: 41,996 RAC: 0 |
Problems with this one too |
anders n Send message Joined: 16 Feb 06 Posts: 166 Credit: 131,419 RAC: 0 |
This one never got past 31 sek. And 2 more 36 sek this time. https://ralph.bakerlab.org/result.php?resultid=313537 https://ralph.bakerlab.org/result.php?resultid=313538 Anders n |
Pepo Send message Joined: 8 Sep 06 Posts: 104 Credit: 36,890 RAC: 0 |
This one (Linux) did not get past 0 seconds too: <message> process exited with code 1 (0x1) </message> <stderr_txt> Graphics are disabled due to configuration... ERROR:: Exit at: read_paths.cc line:346 </stderr_txt> Peter |
bdrcca Send message Joined: 24 Sep 06 Posts: 4 Credit: 9,003 RAC: 0 |
Incorrect dsolv found. |
bdrcca Send message Joined: 24 Sep 06 Posts: 4 Credit: 9,003 RAC: 0 |
Different machine.Same error message-Incorrect dsolv found. |
Snorre Send message Joined: 2 Nov 06 Posts: 2 Credit: 4,329 RAC: 0 |
04/11/2006 13:08:45|ralph@home|Unrecoverable error for result FRA_t364_CASP7_hom001_1_IGNORE_THE_RESTt364_1_S_00001_0000007_0.pdb_1449_5_0 (Systemet finner ikke angitt bane. (0x3) - exit code 3 (0x3)) (System can't find specified path.) Running on a WinXP SP2, AMD X2 4600+. Every single WU I've recieved are like this. |
Pepo Send message Joined: 8 Sep 06 Posts: 104 Credit: 36,890 RAC: 0 |
Few more failing after few seconds. This one (Linux) went 75 seconds, then process exited with code 131 (0x83) # random seed: 2872049 terminate called after throwing an instance of 'std::bad_alloc' what(): St9bad_alloc SIGABRT: abort called Stack trace (20 frames): [0x89f7e63] [0x8a0ff1c] [0x8a76008] [0x8a764c4] [0x8a6423b] [0x8a6183d] [0x8a61872] [0x8a614a3] [0x8a60fac] [0x8a63321] [0x808c7c0] [0x8537af8] [0x8544946] [0x8549a04] [0x854bb47] [0x880f59e] [0x84597ef] [0x856b5d1] [0x8a6f404] [0x8048111] Exiting... Another one (WinXP) after 105 seconds produced a readable stack trace of all threads and a list of modules (BOINC Windows Runtime Debugger). It's a bit large, I'll keep a copy of it. Peter |
John Lewis Highsmith Send message Joined: 1 Mar 06 Posts: 7 Credit: 49,423 RAC: 0 |
Here are 2 more: 1) 11/4/2006 5:03:43 AM|ralph@home|Restarting task 1dcj__ETABLE_TEST_ABRELAX_rhh13sm6__1452_8_1 using rosetta_beta version 537 11/4/2006 5:03:45 AM|ralph@home|Computation for task 1dcj__ETABLE_TEST_ABRELAX_rhh13sm6__1452_8_1 finished 11/4/2006 5:03:46 AM|ralph@home|Unrecoverable error for result 1dcj__ETABLE_TEST_ABRELAX_rhh13sm6__1452_8_1 (<file_xfer_error> <file_name>1dcj__ETABLE_TEST_ABRELAX_rhh13sm6__1452_8_1_0</file_name> <error_code>-161</error_code></file_xfer_error>) 2) 11/4/2006 7:21:25 AM|ralph@home|Starting task FRA_t364_CASP7_hom001_4_IGNORE_THE_RESTt364_1_S_00001_0000007_0.pdb_1454_13_1 using rosetta_beta version 537 11/4/2006 7:21:27 AM|ralph@home|Unrecoverable error for result FRA_t364_CASP7_hom001_4_IGNORE_THE_RESTt364_1_S_00001_0000007_0.pdb_1454_13_1 (Incorrect function. (0x1) - exit code 1 (0x1)) |
Pieface Send message Joined: 16 Feb 06 Posts: 64 Credit: 203,513 RAC: 0 |
Whoopee.... I just had one go thru to completion (first one today): Resid 314118 I hope that's a sign that we're over this rough spot!!! |
[B^S] Gamma^Ray Send message Joined: 20 Oct 06 Posts: 4 Credit: 1,038 RAC: 0 |
Might be just my machine today, But on the new 5.38, I notice with the screen saver maximized, I can't really see much if any of the very bottom text (The URL, And the Accepted Energy). Its fine if its not max though. 5.4.11/6600GT/XP |
Krzychu P. Send message Joined: 16 Feb 06 Posts: 19 Credit: 25,687 RAC: 0 |
I get: 2006-11-06 09:23:07|ralph@home|Unrecoverable error for result DOC_1STF_p1_fa_relax_from_native_1462_4_0 (Niepoprawna funkcja. (0x1) - exit code 1 (0x1)) <core_client_version>5.6.5</core_client_version> <![CDATA[ <message> Niepoprawna funkcja. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 2870558 ABORT: bad to aa_rotno_to_packedrotno aa,rot1/2/3/4: GLN 14 3 1 0 0 chi no 3 nchi 3 aav 1 is_chi_proton_rotamer(aa,aav,i) 0 ERROR:: Exit at: .rotamer_functions.cc line:1509 </stderr_txt> ]]> and I get the message in new window about runtime error C++ |
anders n Send message Joined: 16 Feb 06 Posts: 166 Credit: 131,419 RAC: 0 |
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Trog Dog Send message Joined: 8 Aug 06 Posts: 38 Credit: 41,996 RAC: 0 |
Problems with this wu , but fingers crossed all others seem to be completing ok. |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
>> Here is one that stayed at 1.01% for over 2 hours before changing and died at about 3.5 hours https://ralph.bakerlab.org/result.php?resultid=314538 12336.282599 stderr out <core_client_version>5.2.14</core_client_version> <stderr_txt> Graphics are disabled due to configuration... # random seed: 2870606 # cpu_run_time_pref: 21600 ====================================================== DONE :: 1 starting structures built 1 (nstruct) times This process generated 1 decoys from 1 attempts 0 starting pdbs were skipped ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> <message><file_xfer_error> <file_name>DOC_1MAH_p1_fa_relax_from_native_1462_1_0_0</file_name> <error_code>-161</error_code> <error_message></error_message> </file_xfer_error> Had another one stay at 1.01% for about the same amount of time but is now at 43.81% and still going after 4.45 hours. This is on 5.38. |
Krzychu P. Send message Joined: 16 Feb 06 Posts: 19 Credit: 25,687 RAC: 0 |
I get message in new small window: "Microsoft Visual C++ Runtime Library Runtime Error! Program: ...ralph.bakerlab.orgrosetta_beta_5.38_windows_intelx86.exe This application has requested the Runtime to terminate it in an unusual way. Please contact the application's support team for more information." 2006-11-06 15:54:10|ralph@home|Unrecoverable error for result FRA_t364_CASP7_hom001_1_IGNORE_THE_RESTt364_1_S_00001_0000008_0.pdb_1449_4_2 (System nie mo¿e odnaleŸæ okreœlonej œcie¿ki. (0x3) - exit code 3 (0x3)) [This mean: System nie mo¿e odnaleŸæ okreœlonej œcie¿ki <=> System can't find specified path] <core_client_version>5.6.5</core_client_version> <![CDATA[ <message> System nie mo¿e odnaleŸæ okreœlonej œcie¿ki. (0x3) - exit code 3 (0x3) </message> <stderr_txt> # random seed: 2872053 </stderr_txt> ]]> |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
>> Here is one that stayed at 1.01% for over 2 hours before changing and died at about 3.5 hours >>> And here are another couple https://ralph.bakerlab.org/result.php?resultid=314540 https://ralph.bakerlab.org/result.php?resultid=314539 result 314540 gave:- CPU time 21455.314296 stderr out <core_client_version>5.2.14</core_client_version> <stderr_txt> Graphics are disabled due to configuration... # random seed: 2870596 # cpu_run_time_pref: 21600 ====================================================== DONE :: 1 starting structures built 25 (nstruct) times This process generated 25 decoys from 25 attempts 0 starting pdbs were skipped ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> <message><file_xfer_error> <file_name>DOC_1MEL_p1_fa_relax_from_native_1462_1_0_0</file_name> <error_code>-161</error_code> <error_message></error_message> </file_xfer_error> And result 314539 was the same except for 2 decoys and <file_name>DOC_1MDA_p1_fa_relax_from_native_1462_1_0_0</file> Again this 5.38. Stayed at 1.00% for about 1 hour 35 minutes then went to 1.01% till past 2 hours, jumps to 43.81% and then errors out around the 5 hour mark or near completion. I am watching another 2 at the moment doing the same thing, so I will probably have more fail. |
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Bug reports for Ralph 5.37 through 5.40
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