Message boards : RALPH@home bug list : Minirosetta 1.95
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robertmiles Send message Joined: 13 Jan 09 Posts: 103 Credit: 331,865 RAC: 0 |
Any particular reason why RALPH@home is still testing 1.95 when Rosetta@home is already using 1.97? Also, do you know if the lockfile problem with some of the earlier minirosetta versions has been fixed? If so, I'll stop running one of my computers at 95% CPU instead of 100% CPU in order to look for this problem. |
Murasaki Send message Joined: 1 Aug 09 Posts: 7 Credit: 2,202 RAC: 0 |
Any particular reason why RALPH@home is still testing 1.95 when Rosetta@home is already using 1.97? The Rosetta@home message board says 1.95, 1.96 & 1.97 are the same version but with a few minor changes. |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
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Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
I'm in the middle of running some lr5_score12_gb_run01_rlbd_work units. The first two of them have been running about three hours and the graphics show model 0 step 3 (or 4) with about 60% complete. They still seem to be working at the present moment but the big problem is that there is no checkpoint. People will not be happy if they lose 4-5 hours work when they shut down. |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
One checkpoint arrived at 03:47 and the work unit is now 04:08 with 83% completed - Model 0 Step 6. The other is 04:36 with 92% completed without a checkpoint. Model 0 Step 6 |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
This one failed after about 15 seconds 1601407 ERROR: Anchor outside the subunit... ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Errored after a very short run time This Result 1599194 had this error:- ERROR: Anchor outside the subunit... ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out This Result 1599583 had this error |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
Task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 erroed out after 4s. ERROR: Anchor outside the subunit... ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out msgs: 16/09/2009 20:23:42 ralph@home Starting symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 16/09/2009 20:23:48 ralph@home Starting task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 using minirosetta version 195 16/09/2009 20:23:57 ralph@home Computation for task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 finished 16/09/2009 20:23:57 ralph@home Output file symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1_0 for task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 absent |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
symm_lr8_seq_score12_A_rlbn_1s12_IGNORE_THE_REST_NATIVE_NOCON_12190_10 Its anchors aweigh - my second failure for today - 8 seconds ERROR: Anchor outside the subunit... ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
Its symmetry this time. symm_lr8_seq_score12_A_rlbn_1wit_IGNORE_THE_REST_NATIVE_12192_1 ERROR: [ERROR] Error opening symmetry file '1wit.pdb.symm' ERROR:: Exit from: ....srccoreconformationsymmetrySymmData.cc line: 205 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Errored after a very short run time (Will complete this post now that Ralph is working again} ERROR: [ERROR] Error opening symmetry file '4ubp.pdb.symm' ERROR:: Exit from: src/core/conformation/symmetry/SymmData.cc line: 205 BOINC:: Error reading and gzipping output datafile: default.out And Result 1599811 had this error ERROR: [ERROR] Error opening symmetry file '2vik.pdb.symm' ERROR:: Exit from: ....srccoreconformationsymmetrySymmData.cc line: 205 BOINC:: Error reading and gzipping output datafile: default.out hope this helps Conan |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Errored after a very short run time Add these to the list of failures Result 1603573 Result 1602602 ERROR: Anchor outside the subunit... ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out And the following all had "Maximum Disk Space Exceeded" Result 1605284 Result 1605220 Result 1604841 Result 1604552 Result 1604837 Thanks Conan |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
These tasks errored out after 4s: symm_lr8_seq_score12_A_rlbn_1tit_IGNORE_THE_REST_NATIVE_NOCON_12192_1_1 symm_lr8_seq_score12_A_rlbn_2vik_IGNORE_THE_REST_NATIVE_12192_10_0 ERROR: [ERROR] Error opening symmetry file '2vik.pdb.symm' ERROR:: Exit from: ....srccoreconformationsymmetrySymmData.cc line: 205 BOINC:: Error reading and gzipping output datafile: default.out This task errored out after 13s: symm_lr8_seq_score12_A_rlbd_1rki_IGNORE_THE_REST_DECOY_12188_6_1 ERROR: Anchor outside the subunit... ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out Win XP x_64 |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
For every 1 successful result I am getting at least 2 failures. Now I am getting "Maximum Disk Usage Exceeded" for nearly all the current failures with a few with ERROR: Anchor outside the subunit... ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out |
I _ quit Send message Joined: 13 Jan 09 Posts: 44 Credit: 88,562 RAC: 0 |
4 compute errors in 24 hrs with all the same message: ERROR: Anchor outside the subunit... ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish https://ralph.bakerlab.org/result.php?resultid=1602021 https://ralph.bakerlab.org/result.php?resultid=1602038 https://ralph.bakerlab.org/result.php?resultid=1602049 https://ralph.bakerlab.org/result.php?resultid=1602052 |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
Several errors, second time around: frb_0_8_mike_chosen_cst_oct09_hb_t293__IGNORE_THE_REST_1WS6A_12_12196_1_1 Maximum disk usage exceeded frb_0_8_mike_chosen_cst_oct09_hb_t290__IGNORE_THE_REST_1IHGA_5_12195_1_1 frb_0_8_mike_chosen_cst_oct09_hb_t290__IGNORE_THE_REST_1IHGA_6_12195_1_1 symm_lr8_seq_score12_A_rlbn_1tit_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 Exit from: ....srccoreconformationsymmetrySymmData.cc line: 205 symm_lr8_seq_score12_A_rlbn_1tit_IGNORE_THE_REST_NATIVE_12190_9_1 symm_lr8_seq_score12_A_rlbn_1wdv_IGNORE_THE_REST_NATIVE_NOCON_12190_8_1 |
Murasaki Send message Joined: 1 Aug 09 Posts: 7 Credit: 2,202 RAC: 0 |
Task 1610565 symm_lr8_seq_score12_A_rlbn_1wit_IGNORE_THE_REST_NATIVE_NOCON_12192_9_1 ERROR: [ERROR] Error opening symmetry file '1wit.pdb.symm' Another user who crunched this WU encountered the same error. |
AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
Interesting stderr out in this task. stderr out: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> <stderr_txt> OGFUNC 50 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 9 0 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.7 8 0.02 8.7 8 0.02 9 3 0.02 9 0 0.02 9 0 0.02 9 3 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 9.1 3 0.02 8.6 6 0.02 bounds error (radius =8.96584), def = SOGFUNC 50 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 9 0 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.7 8 0.02 8.7 8 0.02 9 3 0.02 9 0 0.02 9 0 0.02 9 3 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 9.1 3 0.02 8.6 6 0.02 bounds error (radius =8.33761), def = SOGFUNC 50 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 3 0.02 8.1 5 0.02 8.1 5 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.2 4 0.02 8.2 4 0.02 7.9 8 0.02 8.1 5 0.02 8.1 5 0.02 7.9 8 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.2 0 0.02 8.1 3 0.02 ... and many more AdeB |
I _ quit Send message Joined: 13 Jan 09 Posts: 44 Credit: 88,562 RAC: 0 |
Serious problems with this group of tasks: frb_0_8_mike_chosen_cst_oct09(etc) <core_client_version>6.4.7</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> ]]> https://ralph.bakerlab.org/result.php?resultid=1609021 https://ralph.bakerlab.org/result.php?resultid=1612730 (until 1612738) aborting the remaining 4 |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294 |
As AdeB https://ralph.bakerlab.org/result.php?resultid=1613037 <core_client_version>6.10.4</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> <stderr_txt> f = SOGFUNC 7 8.5 0 0.143 9.7 8 0.143 8.5 0 0.143 8.5 0 0.143 8.5 0 0.143 8.5 0 0.143 8.5 0 0.143 bounds error (radius =10.4906), def = SOGFUNC 7 8.5 0 0.143 9.7 8 0.143 8.5 0 0.143 8.5 0 0.143 8.5 0 0.143 8.5 0 0.143 8.5 0 0.143 bounds error (radius =10.4415), def = SOGFUNC 7 6.1 0 0.143 6.5 4 0.143 6.1 0 0.143 6.1 0 0.143 6.1 0 0.143 6.1 0 0.143 6.1 0 0.143 bounds error (radius =10.4415), def = SOGFUNC 7 6.1 0 0.143 6.5 4 0.143 6.1 0 0.143 6.1 0 0.143 6.1 0 0.143 6.1 0 0.143 6.1 0 0.143 bounds error (radius =13.0048), def = SOGFUNC 7 9.2 0 0.143 11.9 0 0.143 9.2 0 0.143 9.2 0 0.143 9.2 0 0.143 9.2 0 0.143 9.2 0 0.143 bounds error (radius =13.0048), def = SOGFUNC 7 9.2 0 0.143 11.9 0 0.143 9.2 0 0.143 9.2 0 0.143 9.2 0 0.143 9.2 0 0.143 9.2 0 0.143 |
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Minirosetta 1.95
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