Minirosetta 1.95

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Profile RodEllery

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Message 4947 - Posted: 31 Aug 2009, 22:36:29 UTC

This task errored after 5+ hours with a file upload error.
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Profile robertmiles

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Message 4948 - Posted: 2 Sep 2009, 1:19:38 UTC

Any particular reason why RALPH@home is still testing 1.95 when Rosetta@home is already using 1.97?

Also, do you know if the lockfile problem with some of the earlier minirosetta versions has been fixed? If so, I'll stop running one of my computers at 95% CPU instead of 100% CPU in order to look for this problem.
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Murasaki

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Message 4950 - Posted: 4 Sep 2009, 6:15:30 UTC - in response to Message 4948.  

Any particular reason why RALPH@home is still testing 1.95 when Rosetta@home is already using 1.97?


The Rosetta@home message board says 1.95, 1.96 & 1.97 are the same version but with a few minor changes.
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Profile nenym

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Message 4951 - Posted: 10 Sep 2009, 20:20:58 UTC
Last modified: 10 Sep 2009, 20:21:51 UTC

Task t7_pgf02_ABRELAX_SAVE_ALL_OUT_12164_1_0 errored out when started.

Win XP x_64
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Evan

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Message 4952 - Posted: 11 Sep 2009, 16:39:28 UTC

I'm in the middle of running some lr5_score12_gb_run01_rlbd_work units. The first two of them have been running about three hours and the graphics show model 0 step 3 (or 4) with about 60% complete. They still seem to be working at the present moment but the big problem is that there is no checkpoint. People will not be happy if they lose 4-5 hours work when they shut down.
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Evan

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Message 4953 - Posted: 11 Sep 2009, 17:53:59 UTC

One checkpoint arrived at 03:47 and the work unit is now 04:08 with 83% completed - Model 0 Step 6.
The other is 04:36 with 92% completed without a checkpoint. Model 0 Step 6
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Evan

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Message 4955 - Posted: 16 Sep 2009, 8:17:59 UTC

This one failed after about 15 seconds
1601407

ERROR: Anchor outside the subunit...
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

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Profile Conan
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Message 4957 - Posted: 16 Sep 2009, 17:46:55 UTC

Errored after a very short run time
This Result 1599194 had this error:-

ERROR: Anchor outside the subunit...
ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out

This Result 1599583 had this error


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Profile nenym

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Message 4958 - Posted: 16 Sep 2009, 18:32:25 UTC

Task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 erroed out after 4s.

ERROR: Anchor outside the subunit...
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out

msgs:
16/09/2009 20:23:42	ralph@home	Starting symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1
16/09/2009 20:23:48	ralph@home	Starting task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 using minirosetta version 195
16/09/2009 20:23:57	ralph@home	Computation for task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 finished
16/09/2009 20:23:57	ralph@home	Output file symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1_0 for task symm_lr8_seq_score12_A_rlbn_256b_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 absent

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Evan

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Message 4959 - Posted: 16 Sep 2009, 19:19:41 UTC

symm_lr8_seq_score12_A_rlbn_1s12_IGNORE_THE_REST_NATIVE_NOCON_12190_10

Its anchors aweigh - my second failure for today - 8 seconds

ERROR: Anchor outside the subunit...
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Evan

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Message 4960 - Posted: 16 Sep 2009, 22:17:05 UTC

Its symmetry this time.
symm_lr8_seq_score12_A_rlbn_1wit_IGNORE_THE_REST_NATIVE_12192_1



ERROR: [ERROR] Error opening symmetry file '1wit.pdb.symm'
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 4961 - Posted: 17 Sep 2009, 0:16:43 UTC - in response to Message 4957.  
Last modified: 17 Sep 2009, 0:20:20 UTC

Errored after a very short run time
This Result 1599194 had this error:-

ERROR: Anchor outside the subunit...
ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out

This Result 1599583 had this error


(Will complete this post now that Ralph is working again}
ERROR: [ERROR] Error opening symmetry file '4ubp.pdb.symm'
ERROR:: Exit from: src/core/conformation/symmetry/SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out

And Result 1599811 had this error

ERROR: [ERROR] Error opening symmetry file '2vik.pdb.symm'
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out

hope this helps
Conan
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Message 4963 - Posted: 17 Sep 2009, 5:54:05 UTC - in response to Message 4961.  

Errored after a very short run time
This Result 1599194 had this error:-

ERROR: Anchor outside the subunit...
ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out

This Result 1599583 had this error


(Will complete this post now that Ralph is working again}
ERROR: [ERROR] Error opening symmetry file '4ubp.pdb.symm'
ERROR:: Exit from: src/core/conformation/symmetry/SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out

And Result 1599811 had this error

ERROR: [ERROR] Error opening symmetry file '2vik.pdb.symm'
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out

hope this helps
Conan


Add these to the list of failures
Result 1603573
Result 1602602

ERROR: Anchor outside the subunit...
ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out

And the following all had "Maximum Disk Space Exceeded"
Result 1605284
Result 1605220
Result 1604841
Result 1604552
Result 1604837

Thanks
Conan

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Profile nenym

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Message 4964 - Posted: 17 Sep 2009, 10:19:47 UTC

These tasks errored out after 4s:
symm_lr8_seq_score12_A_rlbn_1tit_IGNORE_THE_REST_NATIVE_NOCON_12192_1_1
symm_lr8_seq_score12_A_rlbn_2vik_IGNORE_THE_REST_NATIVE_12192_10_0
ERROR: [ERROR] Error opening symmetry file '2vik.pdb.symm'
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out

This task errored out after 13s:
symm_lr8_seq_score12_A_rlbd_1rki_IGNORE_THE_REST_DECOY_12188_6_1
ERROR: Anchor outside the subunit...
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out

Win XP x_64

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Profile Conan
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Message 4965 - Posted: 17 Sep 2009, 12:15:15 UTC
Last modified: 17 Sep 2009, 12:16:23 UTC

For every 1 successful result I am getting at least 2 failures.

Now I am getting "Maximum Disk Usage Exceeded" for nearly all the current failures with a few with
ERROR: Anchor outside the subunit...
ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out
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Message 4966 - Posted: 17 Sep 2009, 14:30:58 UTC

4 compute errors in 24 hrs with all the same message:

ERROR: Anchor outside the subunit...
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\util.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


http://ralph.bakerlab.org/result.php?resultid=1602021
http://ralph.bakerlab.org/result.php?resultid=1602038
http://ralph.bakerlab.org/result.php?resultid=1602049
http://ralph.bakerlab.org/result.php?resultid=1602052



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Message 4967 - Posted: 17 Sep 2009, 18:43:48 UTC

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Murasaki

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Message 4969 - Posted: 19 Sep 2009, 18:35:13 UTC

Task 1610565
symm_lr8_seq_score12_A_rlbn_1wit_IGNORE_THE_REST_NATIVE_NOCON_12192_9_1

ERROR: [ERROR] Error opening symmetry file '1wit.pdb.symm'
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Another user who crunched this WU encountered the same error.
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AdeB
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Message 4970 - Posted: 20 Sep 2009, 21:26:35 UTC
Last modified: 20 Sep 2009, 21:28:31 UTC

Interesting stderr out in this task.

stderr out:
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
<stderr_txt>
OGFUNC 50 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 9 0 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.7 8 0.02 8.7 8 0.02 9 3 0.02 9 0 0.02 9 0 0.02 9 3 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 9.1 3 0.02 8.6 6 0.02
bounds error (radius =8.96584), def = SOGFUNC 50 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 9 0 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.7 8 0.02 8.7 8 0.02 9 3 0.02 9 0 0.02 9 0 0.02 9 3 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 9.1 3 0.02 8.6 6 0.02
bounds error (radius =8.33761), def = SOGFUNC 50 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 3 0.02 8.1 5 0.02 8.1 5 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.2 4 0.02 8.2 4 0.02 7.9 8 0.02 8.1 5 0.02 8.1 5 0.02 7.9 8 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.2 0 0.02 8.1 3 0.02

... and many more 


AdeB
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Message 4971 - Posted: 22 Sep 2009, 0:58:17 UTC

Serious problems with this group of tasks: frb_0_8_mike_chosen_cst_oct09(etc)
<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>

http://ralph.bakerlab.org/result.php?resultid=1609021
http://ralph.bakerlab.org/result.php?resultid=1612730 (until 1612738)

aborting the remaining 4
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