Message boards : RALPH@home bug list : minirosetta 2.05
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Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Got this Error on five Work Units so far ERROR: did not find topology_file: beta_lowE.top ERROR:: Exit from: ....srcprotocolstopology_brokerTemplateJumpClaimer.cc line: 93 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Work Units are 1745497 1745711 1745710 1745699 1745697 Also had "Error Code 161" "/file_xfer_error/" on This WU They all ran for only a short time before failing. |
Krzychu P. Send message Joined: 16 Feb 06 Posts: 19 Credit: 25,687 RAC: 0 |
Task 1746139 At the "stderr out": <message> Niepoprawna funkcja. (0x1) - exit code 1 (0x1) </message> (...) ERROR: did not find topology_file: beta_lowE.top ERROR:: Exit from: ....srcprotocolstopology_brokerTemplateJumpClaimer.cc line: 93 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish In the manager message window: 2010-02-16 08:28:03 ralph@home Starting t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 2010-02-16 08:28:06 ralph@home [task_debug] task_state=EXECUTING for t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 from start 2010-02-16 08:28:06 ralph@home Starting task t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 using minirosetta version 205 2010-02-16 08:28:13 ralph@home update requested by user 2010-02-16 08:28:24 ralph@home [task_debug] Process for t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 exited 2010-02-16 08:28:24 ralph@home [task_debug] task_state=EXITED for t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 from handle_exited_app 2010-02-16 08:28:24 ralph@home [task_debug] result state=COMPUTE_ERROR for t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 from CS::report_result_error 2010-02-16 08:28:24 ralph@home [task_debug] Process for t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 exited 2010-02-16 08:28:24 ralph@home [task_debug] exit code 1 (0x1): Niepoprawna funkcja. (0x1) 2010-02-16 08:28:24 ralph@home Computation for task t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 finished 2010-02-16 08:28:24 ralph@home Output file t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0_0 for task t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 absent 2010-02-16 08:28:24 ralph@home [task_debug] result state=COMPUTE_ERROR for t290__boinc__sel_core_1.5.broker_corebuild_tex_IGNORE_THE_REST_14338_8_0 from CS::app_finished |
Tonno Send message Joined: 23 Nov 06 Posts: 16 Credit: 49,841 RAC: 0 |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
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Tonno Send message Joined: 23 Nov 06 Posts: 16 Credit: 49,841 RAC: 0 |
1746875 <core_client_version>6.10.32</core_client_version> <![CDATA[ <message> Input file t286__boinc_corebuild_round2_rerun_sel_core_1.5.broker_corebuild_tex.boinc.flags missing or invalid: -119 </message> ]]> |
svincent Send message Joined: 4 Apr 08 Posts: 34 Credit: 51,768 RAC: 0 |
Some recent failures on Mac OS X 1749862 1749890 1749891 all failed as follows: ERROR: start_res != middle_res ERROR:: Exit from: src/protocols/moves/KinematicMover.cc line: 132 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> 1749898 failed differently SIGPIPE: write on a pipe with no reader 0 0x006e2839 SIGPIPE: write on a pipe with no reader 1 0x00338ace SIGPIPE: write on a pipe with no reader etc. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
1749893 - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x007E4651 read attempt to address 0x00000008 Engaging BOINC Windows Runtime Debugger... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x007E4651 read attempt to address 0x00000008 - Registers - eax=00000000 ebx=00000000 ecx=017fe47c edx=07886300 esi=017f9d38 edi=00c08198 eip=007e4651 esp=017f8ffc ebp=017f9730 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010246 - Callstack - ChildEBP RetAddr Args to Child 017f9730 0074785d 017fe47c 40d35fcd 017fe944 017fe47c minirosetta_2.05_windows_intelx!protocols::moves::KinematicMover::apply+0xf (d:boinc_buildminirosetta_2.04minisrcprotocolsmoveskinematicmover.cc:343) 017f9f70 006c9d40 017fe47c 40d3570d 078f28f0 00000010 minirosetta_2.05_windows_intelx!protocols::loops::LoopMover_Refine_KIC::apply+0x0 (d:boinc_buildminirosetta_2.04minisrcprotocolsloopsloopmover_kic.cc:780) 017fe33c 0068b980 017fe47c 40d32bc1 00000000 00000009 minirosetta_2.05_windows_intelx!protocols::loops::LoopRelaxMover::apply+0x0 (d:boinc_buildminirosetta_2.04minisrcprotocolsloopslooprelaxmover.cc:740) 017fed44 00405754 00000001 40d32551 00001db0 00000002 minirosetta_2.05_windows_intelx!protocols::loops::LoopRelax_main+0x0 (d:boinc_buildminirosetta_2.04minisrcprotocolsloopsloopbuild.cc:283) 017feedc 00405bb5 00000021 017feef4 000b2300 017feef4 minirosetta_2.05_windows_intelx!main+0x7 (d:boinc_buildminirosetta_2.04minisrcappspublicboincminirosetta.cc:197) 017ffef0 00418647 00400000 00000000 000b2342 0000000a minirosetta_2.05_windows_intelx!WinMain+0x0 (d:boinc_buildminirosetta_2.04minisrcappspublicboincminirosetta.cc:264) 017fff88 768b1174 7ffdf000 017fffd4 7716b3f5 7ffdf000 minirosetta_2.05_windows_intelx!__tmainCRTStartup+0x1c (f:spvctoolscrt_bldself_x86crtsrccrt0.c:324) 017fff94 7716b3f5 7ffdf000 47b5e9f0 00000000 00000000 kernel32!@BaseThreadInitThunk@12+0x0 (f:spvctoolscrt_bldself_x86crtsrccrt0.c:324) 017fffd4 7716b3c8 004186b0 7ffdf000 00000000 00000000 ntdll!___RtlUserThreadStart@8+0x0 (f:spvctoolscrt_bldself_x86crtsrccrt0.c:324) 017fffec 00000000 004186b0 7ffdf000 00000000 00000000 ntdll!__RtlUserThreadStart@8+0x0 (f:spvctoolscrt_bldself_x86crtsrccrt0.c:324) *** Dump of thread ID 2892 (state: Initialized): *** - Information - Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000 - Registers - eax=03c2f880 ebx=00000000 ecx=00000005 edx=0000007c esi=03c2ff48 edi=00000000 eip=771564f4 esp=03c2ff04 ebp=03c2ff6c cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206 - Callstack - ChildEBP RetAddr Args to Child 03c2ff00 77154c1c 753a1876 00000000 03c2ff48 4267f096 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0] 03c2ff04 753a1876 00000000 03c2ff48 4267f096 00000000 ntdll!_ZwDelayExecution@8+0x0 FPO: [2,0,0] 03c2ff6c 753a1818 00000064 00000000 03c2ff94 004088ab KERNELBASE!_SleepEx@8+0x0 03c2ff7c 004088ab 00000064 00000000 768b1174 00000000 KERNELBASE!_Sleep@4+0x0 03c2ff88 768b1174 00000000 03c2ffd4 7716b3f5 00000000 minirosetta_2.05_windows_intelx!timer_thread+0x0 (d:boinc_buildminirosetta_2.04miniexternalboincapiboinc_api.cpp:922) 03c2ff94 7716b3f5 00000000 4508e9f0 00000000 00000000 kernel32!@BaseThreadInitThunk@12+0x0 (d:boinc_buildminirosetta_2.04miniexternalboincapiboinc_api.cpp:922) 03c2ffd4 7716b3c8 004088a0 00000000 00000000 00000000 ntdll!___RtlUserThreadStart@8+0x0 (d:boinc_buildminirosetta_2.04miniexternalboincapiboinc_api.cpp:922) 03c2ffec 00000000 004088a0 00000000 00000000 fb8de5f8 ntdll!__RtlUserThreadStart@8+0x0 (d:boinc_buildminirosetta_2.04miniexternalboincapiboinc_api.cpp:922) *** Dump of thread ID 3452 (state: Initialized): *** - Information - Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000 - Registers - eax=094dfe28 ebx=075d7900 ecx=094de734 edx=000000b9 esi=094dfdfc edi=00000000 eip=771564f4 esp=094dfdb8 ebp=094dfe20 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206 - Callstack - ChildEBP RetAddr Args to Child 094dfdb4 77154c1c 753a1876 00000000 094dfdfc 48e8f1da ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0] 094dfdb8 753a1876 00000000 094dfdfc 48e8f1da 000000bb ntdll!_ZwDelayExecution@8+0x0 FPO: [2,0,0] 094dfe20 753a1818 000007d0 00000000 768aef66 006a42d1 KERNELBASE!_SleepEx@8+0x0 094dfe30 006a42d1 000007d0 48e136cd 00000000 075d7908 KERNELBASE!_Sleep@4+0x0 094dff40 006a44e7 00000000 00414e2c 00000000 48e1370d minirosetta_2.05_windows_intelx!protocols::boinc::watchdog::main_watchdog+0x0 (d:boinc_buildminirosetta_2.04minisrcprotocolsboincwatchdog.cc:316) 094dff48 00414e2c 00000000 48e1370d 00000000 075d7908 minirosetta_2.05_windows_intelx!protocols::boinc::watchdog::main_watchdog_windows+0x7 (d:boinc_buildminirosetta_2.04minisrcprotocolsboincwatchdog.cc:94) 094dff80 00414ed1 00000000 768b1174 075d7908 094dffd4 minirosetta_2.05_windows_intelx!_callthreadstartex+0x6 (f:spvctoolscrt_bldself_x86crtsrcthreadex.c:348) 094dff88 768b1174 075d7908 094dffd4 7716b3f5 075d7908 minirosetta_2.05_windows_intelx!_threadstartex+0x5 (f:spvctoolscrt_bldself_x86crtsrcthreadex.c:326) 094dff94 7716b3f5 075d7908 4f87e9f0 00000000 00000000 kernel32!@BaseThreadInitThunk@12+0x0 (f:spvctoolscrt_bldself_x86crtsrcthreadex.c:326) 094dffd4 7716b3c8 00414e52 075d7908 00000000 00000000 ntdll!___RtlUserThreadStart@8+0x0 (f:spvctoolscrt_bldself_x86crtsrcthreadex.c:326) 094dffec 00000000 00414e52 075d7908 00000000 09690000 ntdll!__RtlUserThreadStart@8+0x0 (f:spvctoolscrt_bldself_x86crtsrcthreadex.c:326) *** Debug Message Dump **** |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
1544269 1544268 1544270 1544271 After different calculation times, all the same error: ERROR: [ERROR] Unable to open constraints file: aqp9_.dist_csts ERROR:: Exit from: ....srccorescoringconstraintsConstraintIO.cc line: 332 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
1544269 Same error in task 1750870. AdeB |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
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Cyph3r Send message Joined: 25 Oct 08 Posts: 1 Credit: 325,594 RAC: 0 |
I had the following error message: 1757476 SIGSEGV: segmentation violation Stack trace (17 frames): [0x96c49b3] [0x96ee888] [0xf7f90400] [0x8d2a923] [0x8d2aaf2] [0x8d6efb3] [0x8c49cb5] [0x8f95cf0] [0x88b5050] [0x88b97a6] [0x873763f] [0x812a54a] [0x812b82d] [0x86aa16b] [0x8049a26] [0x974c15c] [0x8048121] Exiting... ------------//------------ and: 1757331 *** glibc detected *** free(): invalid pointer: 0xec562de1 *** SIGABRT: abort called Stack trace (20 frames): [0x96c49b3] [0x96ee888] [0xf7fef400] [0x97532d4] [0x9768fc2] [0x976def3] [0x976e3bb] [0x973e0c1] [0x81bdfb1] [0x902371b] [0x8486f0d] [0x900bc5c] [0x8f9b5d9] [0x8627747] [0x812a167] [0x812b82d] [0x86aa16b] [0x8049a26] [0x974c15c] [0x8048121] Exiting... Other WUs in the same machine (Linux have similar errors: 1758427 1757675 |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
100% validate errors (11 out of 11) using win xp and the hard drive is going continuously as it processes 4 units at a time. The work units are fcDE-W3..... |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
I wouldn't be surprised if there is going to be a chorus of complaints from the Rosetta users about the way these fcDE-W3.. units are hogging the hard drive. I have found that if you want to open files, access the internet etc you have to put boinc on snooze because the hard drive is otherwise occupied. The task manager shows the processors changing from 0 to 100% at very frequent intervals. In the past the indicator show a steady 100%. To top it all, the validation error is still staying at a constant 100%. |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
While the validate errors seem to have been corrected (at least the ones I am processing now), they all have quite short run times and ALL of them process 10,000 Decoys then finish. This is a new record, it is the most decoys I have seen since I started this project (I certain I think). Looks like this is an inbuilt maximum number of decoys that can be processed for a work unit. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
While the validate errors seem to have been corrected (at least the ones I am processing now) I hope..... |
Tonno Send message Joined: 23 Nov 06 Posts: 16 Credit: 49,841 RAC: 0 |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
A gunn-fragments error: 1759776 ERROR: ct == final_atoms ERROR:: Exit from: ....srccorescoringrms_util.cc line: 397 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish and,usualy, a tons of validate error in fcDE-W3 wu..... |
strauch Send message Joined: 15 Mar 10 Posts: 1 Credit: 4,730 RAC: 0 |
thanks for pointing this one out. We are working on a fix for those jobs. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
As usual, validate errors 1765734 1765727 1765728 Most of errors are on my Phaenom II X4 (and windows 7)....problems with L3 cache? SSE extension? No problems with Turion X2 (windows 7) or Amd Mobile single core (windows xp). |
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minirosetta 2.05
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