Message boards : RALPH@home bug list : Minirosetta 2.14
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Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Posts for this series of work units were being posted under thread "Minirosetta 2.12" so I thought I would create one for the current series of work units. On WU 1831281 Had this error ERROR: Cannot open patchdock file: 1fAc_2odh.patchdock ERROR:: Exit from: src/protocols/ProteinInterfaceDesign/read_patchdock.cc line: 101 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Had this WU 1834847 that reached 86.402% completion sometime between 6 and 7 hours run time, it was still at 86.402% after 19 hours 21 minutes so I aborted it. If I have read the slot directory right then it did 167 checkpoints but just did not progress. My preferences are set for 6 hours so the WU should of timed out for taking so long, if it still had not finished the first decoy then the WU has a problem. |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
ERROR: ERROR: FragmentIO: could not open file myoglobin.frag9.rosetta.tab ERROR:: Exit from: ....srccorefragmentFragmentIO.cc line: 258 BOINC:: Error reading and gzipping output datafile: default.out On This WU |
apohawk Send message Joined: 1 Dec 09 Posts: 5 Credit: 272,237 RAC: 0 |
parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1 https://ralph.bakerlab.org/workunit.php?wuid=1631447 This unit crashed in similiar fashion at both hosts crunching it. https://ralph.bakerlab.org/result.php?resultid=1848472 2010-05-28 07:30:03 ralph@home Output file parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1_0 for task parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1 absent # cpu_run_time_pref: 28800 ====================================================== DONE :: 50 starting structures 28554.5 cpu seconds This process generated 50 decoys from 50 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]> |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
1849542 ERROR: Unable to open weights. Neither ./pcs.weight1.patch nor minirosetta_databasescoring/weights/pcs.weight1.patch.wts_patchexist ERROR:: Exit from: ....srccorescoringScoreFunction.cc line: 262 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
1849542 Same error on 3 work units 1849128 1849129 1849130 Also had a file transfer error (XFER ERROR) on 1848730 |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
[quote]1849542 Here is another with the same error 1849490 |
Divide Overflow Send message Joined: 15 Feb 06 Posts: 12 Credit: 128,027 RAC: 0 |
Completed successfully and validated, but with an odd error message: ERROR: ERROR: Residue not supported by Placement coordinate constraint machinery ERROR:: Exit from: ....srcprotocolsProteinInterfaceDesignmoversPlaceUtils.cc line: 281 called boinc_finish https://ralph.bakerlab.org/result.php?resultid=1851904 |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
Same here: 1851619 |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
No work, no debug.... :-) |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
No work, no debug.... :-) oh, well....thank you!! |
EvoDude Send message Joined: 18 Feb 06 Posts: 28 Credit: 639,833 RAC: 0 |
Another batch of this series and another batch of computation errors! |
Snagletooth Send message Joined: 4 May 07 Posts: 67 Credit: 134,427 RAC: 0 |
SAXS-rescore-1eovA__14879_15 Mon Sep 6 12:03:24 2010 ralph@home Output file SAXS-rescore-1eovA__14879_15_0_0 for task SAXS-rescore-1eovA__14879_15_0 absent ====================================================== DONE :: 1 starting structures 12857.1 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>SAXS-rescore-1eovA__14879_15_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> |
AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
SAXS-rescore-1ks9A__14879_6_1 The same error as Snagletooth. ma 06 sep 2010 17:07:49 CEST ralph@home Output file SAXS-rescore-1ks9A__14879_6_1_0 for task SAXS-rescore-1ks9A__14879_6_1 absent stderr out: ====================================================== DONE :: 1 starting structures 13314.1 cpu seconds This process generated 9 decoys from 9 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>SAXS-rescore-1ks9A__14879_6_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> AdeB |
apohawk Send message Joined: 1 Dec 09 Posts: 5 Credit: 272,237 RAC: 0 |
No luck here either on those "SAXS-rescore". For 13 tasks crunched so far on two machines (1 windows, 1 linux), all 13 got "computation error". <message> <file_xfer_error> <file_name>SAXS-rescore-1tf4B__14879_16_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> For Your Information. EDIT I just saw one WU finish on win7, got to 100% and then this: 2010-09-06 22:37:57 ralph@home Output file SAXS-rescore-1mgtA__14879_16_0_0 for task SAXS-rescore-1mgtA__14879_16_0 absent |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
Same here 1906579 |
mentabelgium Send message Joined: 28 Nov 06 Posts: 1 Credit: 8,663 RAC: 0 |
Another one here |
AdeB Send message Joined: 22 Dec 07 Posts: 61 Credit: 161,367 RAC: 0 |
SAXS-rescore-1qfjC__14882_5_0 stderr out: ERROR: ERROR: Unable to open silent_input file: 'default.out' ERROR:: Exit from: src/core/io/silent/SilentFileData.cc line: 86 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Watchdog active. AdeB |
sqweeser Send message Joined: 19 Jun 06 Posts: 5 Credit: 66,131 RAC: 0 |
Compute error in WU: SAXS-rescore-1eudA__14881_3_1 with the following error: ERROR: Option file open failed for: 1eudA-linker_sampler_protocol-saxs-1.0.flags |
nenym Send message Joined: 16 Jan 09 Posts: 14 Credit: 1,007,003 RAC: 0 |
All SAXS tasks erroed out <file_xfer_error> <file_name>SAXS-rescore-1gcyA__14879_3_0_0</file_name> <error_code>-161</error_code> </file_xfer_error>after finishing wu's (cca 42 000 s). XP 32bit SAXS-rescore-1bi5A__14879_2_1, SAXS-rescore-1mgtA__14879_12_0 XP 64bit SAXS-rescore-1gcyA__14879_3_0, SAXS-rescore-1d5rA__14879_7_1, SAXS-rescore-1dzfA__14879_15_1 No credit granted. |
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