Rosetta mini beta and/or android 3.61-3.83

Author	Message
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6181 - Posted: 22 Apr 2017, 9:21:06 UTC - in response to Message 6180. I aborted those that I had at 99%. After 150h i quit. I think it's a bug of these wus No problems with "ab_12_01_...." wus ID: 6181 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6182 - Posted: 26 Apr 2017, 7:14:09 UTC - in response to Message 6166. Last modified: 26 Apr 2017, 7:14:23 UTC The arm app is running the latest Rosetta version. The 3.8 version?? ID: 6182 · Reply Quote

Admpicard999 Send message Joined: 4 Sep 16 Posts: 2 Credit: 1,257 RAC: 0	Message 6183 - Posted: 4 May 2017, 13:58:09 UTC - in response to Message 6182. I have a WU that has been running 215+ hours, now at 99.7%. it's been at 99+ for at least a week. The deadline was now several days ago. At what point to do I give up and cancel the WU? ID: 6183 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6184 - Posted: 5 May 2017, 18:16:45 UTC - in response to Message 6183. I have a WU that has been running 215+ hours, now at 99.7%. it's been at 99+ for at least a week. The deadline was now several days ago. At what point to do I give up and cancel the WU? Kill it ID: 6184 · Reply Quote

BQL_FFM Send message Joined: 7 Oct 16 Posts: 1 Credit: 53,648 RAC: 0	Message 6185 - Posted: 7 May 2017, 11:09:35 UTC 4051342 Name ab_12_01__vall_2011_1rnbA_vall_2011_9mers_3mers_20564_374_0 Workunit 3565236 4051267 Name ab_12_01__vall_2011_1lisA_vall_2011_9mers_3mers_20564_373_0 Workunit 3565167 Tasks aborted, the started again and again after max ca. 60 seconds. ID: 6185 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6211 - Posted: 30 Sep 2017, 8:46:11 UTC Rosetta Rosetta beta Rosetta mini Rosetta mini beta I'm little bit confused... :-) ID: 6211 · Reply Quote

dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6212 - Posted: 2 Oct 2017, 18:18:23 UTC - in response to Message 6211. The latest boinc client release, 7.8.2 is buggy. The BOINC developers are working on a fix but not knowing how long it may take, I will be testing application side fixes for the minirosetta app. The main issue is that work may run in dirty slot directories and when this happens our application crashes. It's causing a 10-20% increase in failures. ID: 6212 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6213 - Posted: 2 Oct 2017, 19:57:25 UTC - in response to Message 6212. The latest boinc client release, 7.8.2 is buggy. The BOINC developers are working on a fix but not knowing how long it may take, I will be testing application side fixes for the minirosetta app. I know this problem, but i was thinking you were abandoning the "old" 3.x versions.... ID: 6213 · Reply Quote

dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6214 - Posted: 2 Oct 2017, 22:25:47 UTC - in response to Message 6213. We are still actively using 3.73 for forward folding and for Robetta structure prediction. ID: 6214 · Reply Quote

Roadranner Send message Joined: 15 Oct 13 Posts: 4 Credit: 528,888 RAC: 24	Message 6215 - Posted: 3 Oct 2017, 3:34:13 UTC One task (#4084226) stalled at 83.144%. I'm going to stop it now. ID: 6215 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6218 - Posted: 17 Oct 2017, 7:10:22 UTC - in response to Message 6214. We are still actively using 3.73 for forward folding and for Robetta structure prediction. I notice. We are still crunching this version on Ralph.... ID: 6218 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6219 - Posted: 19 Oct 2017, 10:02:51 UTC - in response to Message 6218. We are still actively using 3.73 for forward folding and for Robetta structure prediction. I notice. We are still crunching this version on Ralph.... My fault. I'm crunching 3.78 app. I hope we start to test largely the 4.x version ID: 6219 · Reply Quote

TPCBF Send message Joined: 20 Jun 11 Posts: 30 Credit: 27,776 RAC: 0	Message 6220 - Posted: 19 Oct 2017, 17:19:51 UTC - in response to Message 6215. One task (#4084226) stalled at 83.144%. Got about a dozen or so he last couple of days. They all would end up in a compute error or stall out at various percentages in the 70-90% range, blocking any other useful WU from running. I noticed that pretty much all WUs checkpoint after about 13 secs, then won't show another checkpoint for hours until they crap out. Also, I had to manually remove a dozen or so dead tasks in the task manager to get my machine responsive again... Have the last two running right now, which show a slightly different behaviour (at least while I can watch them). Started about 15min ago, they show 12% done, 12 min of CPU time vs 15 clock time and the check point increasing each time I check by about 10 secs, but still a fraction of the indicated CPU time used. I am using BOINC agent 7.8.3 on an 8GB/i3/Windows 8.1 host... ID: 6220 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6489 - Posted: 16 Jan 2018, 22:36:35 UTC A lot of errors on my Win10 4192704 4192348 etc. ERROR: Warning: can't open file t000_.fasta! ERROR:: Exit from: ......srccoresequenceutil.cc line: 148 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish [/quote] ID: 6489 · Reply Quote

Dr Who Fan Send message Joined: 2 Sep 06 Posts: 76 Credit: 107,857 RAC: 0	Message 6490 - Posted: 17 Jan 2018, 5:07:03 UTC - in response to Message 6489. Same error on 4 tasks: 4191210 4191171 4189917 4189960 ERROR: Warning: can't open file t000_.fasta! ERROR:: Exit from: ......srccoresequenceutil.cc line: 148 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 6490 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294	Message 6491 - Posted: 17 Jan 2018, 6:42:26 UTC - in response to Message 6489. ERROR: Warning: can't open file t000_.fasta! ERROR:: Exit from: ......srccoresequenceutil.cc line: 148 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish These above are errors after few seconds, others after 2 or 3 hours 4193187 4193217 etc ====================================================== DONE :: 1 starting structures 14521.4 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 3.40202e+008 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>e8bf7_SOL_jumping_all_pairings_SAVE_ALL_OUT_20700_2_1_r875276919_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> </message> ID: 6491 · Reply Quote

Mad_Max Send message Joined: 15 Nov 12 Posts: 15 Credit: 404,700 RAC: 0	Message 6492 - Posted: 17 Jan 2018, 21:32:14 UTC ALL of my WUs from latest batch errored out Some very soon(just 1-2 min) after start with similar errors: ERROR: Warning: can't open file t000_.fasta! ERROR:: Exit from: ......srccoresequenceutil.cc line: 148 BOINC:: Error reading and gzipping output datafile: default.out Other near the end of computation with another errors: <message> upload failure: <file_xfer_error> <file_name>40a6c_SOL_jumping_all_pairings_SAVE_ALL_OUT_20700_2_1_r1951005696_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ID: 6492 · Reply Quote

Dr Who Fan Send message Joined: 2 Sep 06 Posts: 76 Credit: 107,857 RAC: 0	Message 6493 - Posted: 20 Jan 2018, 6:42:18 UTC - in response to Message 6492. SAME HERE: Application version Rosetta Mini v3.78 windows_intelx86 TASK 4193784 ====================================================== DONE :: 1 starting structures 25656.8 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: WS_max 4.0303e+008 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>84897_SOL_jumping_all_pairings_SAVE_ALL_OUT_20700_10_1_r1828484885_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> </message> ]]> ID: 6493 · Reply Quote

PDW Send message Joined: 30 Aug 14 Posts: 6 Credit: 1,832,794 RAC: 0	Message 6514 - Posted: 28 Mar 2018, 9:09:03 UTC https://ralph.bakerlab.org/workunit.php?wuid=3786787 bdff5_MEM_cplu_180319_jumping_all_pairings_SAVE_ALL_OUT_IGNORE_THE_REST_20754_3 Errors out with... Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_d0bf94b.zip Unpacking WU data ... Unpacking data: ../../projects/ralph.bakerlab.org/bdff5_MEM_cplu_180319.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... ERROR: [ERROR] Unable to open constraints file: bdff5_MEM_t000.cst ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 461 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 6514 · Reply Quote

PDW Send message Joined: 30 Aug 14 Posts: 6 Credit: 1,832,794 RAC: 0	Message 6515 - Posted: 28 Mar 2018, 13:31:21 UTC - in response to Message 6514. These two: https://ralph.bakerlab.org/workunit.php?wuid=3786735 https://ralph.bakerlab.org/workunit.php?wuid=3786774 had this error... Starting work on structure: _00001 ERROR: p>=1 && p<= (int) pairings_.size() ERROR:: Exit from: ......srcprotocolsjumpingSheetBuilder.cc line: 157 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 6515 · Reply Quote