Rosetta 4.12+
Message boards : RALPH@home bug list : Rosetta 4.12+
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WezH Send message Joined: 24 Apr 20 Posts: 6 Credit: 181,771 RAC: 0 |
Even with 4.17, after few seconds, i have these errors, like 4.15 (only two wus, however): Same here, 9 errors from 184 tasks |
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Trotador Send message Joined: 7 May 10 Posts: 33 Credit: 14,751,677 RAC: 0 |
4.20 still failing this way https://ralph.bakerlab.org/workunit.php?wuid=4518120 <core_client_version>7.14.2</core_client_version> <![CDATA[ <stderr_txt> command: ../../projects/ralph.bakerlab.org/rosetta_4.20_x86_64-pc-linux-gnu -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--il1r_design_boinc_v1_mod.xml @flags_il6r2 -in:file:silent Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f.silent -in:file:silent_struct_type binary -silent_gz -mute all -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f.zip @Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f.flags -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 5000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3976176 Using database: database_357d5d93529_n_methyl/minirosetta_database ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 06:39:06 (90949): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f_32_771_1_r543859209_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]> |
 Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Tried running a couple of 4.20 work units, but they both failed after less than 1 1/2 minutes with the error 'Process got Signal 11" This also happened with my wingman he got the same error. Conan |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
All errors after few seconds 5154586 5154504 5154616 - Unhandled Exception Record - - Unhandled Exception Record - - Unhandled Exception Record - etc... |
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PDW Send message Joined: 30 Aug 14 Posts: 6 Credit: 1,832,794 RAC: 0 |
All of the ones just released, like these: test_ff_sym_c3_21res_c.127.43_0001_I_21_3_hit_CYS_GLU_4_5_4_cell033_0001_SAVE_ALL_OUT_47_105_1 Access Violation, even just a single WU running on its own with plenty of memory. |
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PDW Send message Joined: 30 Aug 14 Posts: 6 Credit: 1,832,794 RAC: 0 |
More of the same: test_ff_sym_c3_21res_c.127.43_0001_I_21_3_hit_CYS_GLU_4_5_4_cell033_0001_SAVE_ALL_OUT_47_357_1 All Access Violation again. |
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PDW Send message Joined: 30 Aug 14 Posts: 6 Credit: 1,832,794 RAC: 0 |
Today's tasks are a fail with file upload error on Windows at least. |
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CIA Send message Joined: 5 Apr 20 Posts: 13 Credit: 111,953 RAC: 0 |
I only got one recent Ralph WU but it didn't fare so well on my OSX machine, or on another Linux machine that also tried. https://ralph.bakerlab.org/workunit.php?wuid=4615810 |
Dr Who Fan Send message Joined: 2 Sep 06 Posts: 76 Credit: 107,857 RAC: 0 |
Failed for BOTH me and the wingman Task 5155194 Outcome Computation error Client state Compute error Exit status 0 (0x00000000) Stderr output <core_client_version>7.16.3</core_client_version>  
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robertmiles Send message Joined: 13 Jan 09 Posts: 103 Credit: 331,865 RAC: 0 |
This seems like to be the same problems affecting several BOINC projects which have switched to SSL uploads and downloads. Rosetta@home is one of those affected. It's caused by an expired entry in the ca-bundle.crt file that's part of BOINC. If that's the cause, it will take an update to that file to fix the problem by removing the expired entry. That may, in turn, require a new version of BOINC for those users who don't know how to modify the files that are part of BOINC by any means other than updating BOINC. https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14006 https://boinc.berkeley.edu/forum_thread.php?id=13758&sort=5 |
Bestort Send message Joined: 3 Aug 20 Posts: 1 Credit: 0 RAC: 0 |
Bestort - Best Home Security Products is an amazing, easy to set up CCTV camera system. Composed of cameras and a module, it is a wireless system that is intuitively configured to turn your home into a smart home and increase security. Check out my Bestort camera review and see if Blink can bring you peace of mind! https://bestort.com/ Blink offers two different models. There is a Bestort - Best Home Security Productsinternal security camera that I tested. You will also find Blink XT Indoor / Outdoor HD Security Camera. Blink XT adds features like HD quality and IR night vision. I checked out vanilla Bestort. More precisely, my test block was a three-camera system. In the box I found three Blink cameras and a sync module. Flashing is available in one, two, three and five camera configurations. Bestort XT is available as a single or triple chamber system. But the standalone Blink and Blink XT cameras are available for purchase. Likewise, the Blink sync module is available separately. In addition to the Bestort and camera sync module, you'll find mounting brackets and included screws, as well as 3M adhesive strips for non-intrusive installation. https://bestort.com/ As hardware, you will find a 720p camera with a 110-degree lens. There is a motion sensor and a micro USB slot. Inner camera flashing: setting In my review of the Bestort, I found that Blink is extremely intuitive. Each box contains a brochure with instructions for use. It's as easy as downloading an app, setting up a sync module, installing cameras, and connecting wirelessly. Thus, Bestort is a stunning home security monitor that is perfect for everyone from power users to smart beginners. First, go to your preferred app store and download the Bestort app. It's available for free on the Google Play and iTunes stores. Sorry Windows Phone users, out of luck. There is also no Ubuntu phone support, but Canonical has canceled Ubuntu Touch so this should come as no surprise. After downloading the Blink app, you will need to create an account. Again, it's free and you don't even need to verify your account to get started. After downloading the app and setting up your account, just plug in the sync module. This connects to the included wall adapter. But since the power cable of the sync module uses a USB cable, it must be compatible with any USB port. Of course, you need to ensure the correct power consumption. However, I doubt it is that high. Then add your sync module to your Blink app. This can be done by manually entering the serial number or by scanning the QR code on the back of the device. When added as a device in the Bestort app. Then add your sync module to your Blink app. This can be done by manually entering the serial number or by scanning the QR code on the back of the device. When added as a device in the Bestort app. https://bestort.com/ Once it's added as a device to the Blink app, connect to the sync module like a Wi-Fi network. Blink will then prompt you to find the Wi-Fi network to which you want to connect the Blink sync module. Find it in the list of Wi-Fi networks and enter your password. You should now be connected to the sync module. Give it a name such as home, office, or work. Next in our Bestort - Best Home Security Products review we will connect our cameras. Since you've connected your sync module to the Blink app, you'll see a camera icon and the words “Add Blink Camera” at the bottom. Click on it and you will see a screen with Blink and Blink XT next to it. Then select the camera you are configuring. In my case, it was Blink. Now that you have selected your camera, you will see a short video explaining how to set it up. Click on it and you will see a screen with Blink and Blink XT next to it. Then select the camera you are configuring. In my case, it was Blink. Now that you have selected your camera, you will see a short video explaining how to set it up. Now that you have selected your camera, you will see a short video explaining how to set it up. When you're ready, you will need to enter your serial number again or scan the QR code. After connecting to the camera, you will click the screenshot button to take a picture with your camera. This allows you to view the camera's angle of view and line of sight as well as connectivity. If you're happy with this, leave the camera as it is, or move it. With your neatly labeled rooms, you'll be able to see them conveniently on the home screen in your Blink camera app. Then you can watch live video or take a screenshot. You can even include audio in the video. I found the video quality to be excellent, even in low light conditions. If you have multiple modules in multiple locations, you can view them in the dropdown. Although I only have one block set up as Home, it's easy to use the dropdown to switch to a different location. This way, you can use the Blink camera app to monitor multiple locations such as your home and office. For each camera, you can set different options and view settings. Clicking on the gear above each camera gives you some information on battery life as well as temperature. Notably, this is in beta. But you can set temperature alerts. For example, a hot or cold warning if the temperature drops below a certain temperature. There is also a motion detection function. Most consumer-oriented home security systems do not keep a permanent record. Instead, they offer motion detection recording. Thus, you can set the trigger time, sensitivity and clip length. The sound and video quality is excellent. I was impressed with the various settings. You can unwind an array of Blink cameras in less than an hour. I set up mine in less than half an hour. This is with rearranging multiple cameras. I love the simplicity of both hardware and software. Blink for home provides an intuitive interface with elegant hardware and software for a reasonable $ 100 price tag. However, experienced users may leave a lot to be desired. You won't find more advanced settings like sound alerts and third party integrations. Likewise, although you can take screenshots and view live video, there is no on-demand recording. Also, local storage is not available. While this is a fantastic wireless security system for a smart home, you won't find features like scheduled arming and disarming or two-way audio. However, the Blink wireless home security camera is phenomenally priced and the most intuitive security camera available. The software is stable and I appreciate its simplicity. Ultimately, in my review of the Blink camera, I found that Blink is best for both beginners and experienced smart home users. Advanced users will surely love Blink. However, the lack of certain planning features and aspects of smart home automation can get in the way of advanced smart home gurus. Blink for home is an amazing wireless security camera. The price is more than reasonable and I like the modular setup. Even though my review unit came with three internal cameras and a sync module, it's easy to add more cameras. I will probably pick up a Blink XT for use outside the door. The hardware is reliable and of high quality, especially for the price. There isn't a ton of what it does other than basic monitoring. But especially considering its thermal performance, which is currently in beta, look forward to future updates. For basic monitoring, this is a stunning wireless indoor surveillance camera.https://bestort.com/ |
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robertmiles Send message Joined: 13 Jan 09 Posts: 103 Credit: 331,865 RAC: 0 |
A minor problem with the last batch of tasks - they arrive showing an estimated runtime of about 1 hour, but are now approaching an actual 6 hours. |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
All validated, but errors: [ ERROR ]: Caught exception: |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
5188942 <core_client_version>7.16.7</core_client_version> |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
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matsu_pl Send message Joined: 2 May 20 Posts: 2 Credit: 42,305 RAC: 0 |
Plenty of errors: ERROR: Cannot find file '-extra_res_fa or minirosetta_database/chemical/residue_type_sets/fa_standard/residue_types/-extra_res_fa' ERROR:: Exit from: src/core/chemical/residue_io.cc line: 144 BOINC:: Error reading and gzipping output datafile: default.out Tasks: https://ralph.bakerlab.org/result.php?resultid=5219971 https://ralph.bakerlab.org/result.php?resultid=5219975 https://ralph.bakerlab.org/result.php?resultid=5220383 |
adrianxw Send message Joined: 9 Mar 19 Posts: 5 Credit: 6,125 RAC: 0 |
The current tasks are running fine on this machine. On my other, the tasks seem to fail at once. Machines are almost identical hardware wise, have Windows 8.1 x64 as the OS. Other projects are not having trouble. Am I missing some system software component? Wave upon wave of demented avengers march cheerfully out of obscurity into the dream. |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
New kind of app ("5nvx_graft_buwei"), new error: ERROR: [ERROR] Unable to open constraints file: m_HHH_b2_06446_000000083_0001_1_18_H_._HHH_b1_01336_0001_1_0001.MSAcst ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 457 BOINC:: Error reading and gzipping output datafile: default.out 07:57:08 (7768): called boinc_finish(1) |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
Some wus go "out of memory", maybe cannot initialize correctly over 6gb of ram Unhandled Exception Detected... |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 908 Credit: 1,892,541 RAC: 294 |
My default runtime is 2hrs. I killed this wu after 16hrs: <stderr_txt> |
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Rosetta 4.12+
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