Rosetta version 4.18 released for testing

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Profile dekim
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Message 6766 - Posted: 30 Apr 2020, 17:11:45 UTC

Please provide feedback in the discussion thread.
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Message 6768 - Posted: 30 Apr 2020, 17:13:12 UTC

The improvements in this update include:

1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database.

2. Checkpointing added to the Rosetta comparative modeling method.

Please test these updates and let us know if there are any issues. Thanks!
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WezH

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Message 6769 - Posted: 30 Apr 2020, 17:43:59 UTC
Last modified: 30 Apr 2020, 17:46:11 UTC

No tasks available, maybe because about 4500 (4.18 and older) of them are in five Top20 hosts....

Maybe max wu per host should be implemented, wider spread to different computers...
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Message 6770 - Posted: 30 Apr 2020, 18:29:44 UTC - in response to Message 6768.  
Last modified: 30 Apr 2020, 18:31:50 UTC

The improvements in this update include:

1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database.

2. Checkpointing added to the Rosetta comparative modeling method.

Please test these updates and let us know if there are any issues. Thanks!


Normal "Show Graphics" and screen saver graphics appear to be working under OS X with the 4.18 app.

More info: There is a 10-15 second delay in starting the screensaver, the screen goes black and seems to not work, but this just may be a Boinc thing. I don't run the screensaver so can't comment if this is normal. The screen saver does eventually kick in and act normally.
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Message 6771 - Posted: 30 Apr 2020, 18:32:25 UTC - in response to Message 6770.  

That's normal
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Message 6772 - Posted: 30 Apr 2020, 19:13:39 UTC
Last modified: 30 Apr 2020, 19:21:55 UTC

Just for fun, a reminder for those who are opening up the graphics window, you can change the display by pressing the keys:

's' to change the side chain display, for example to show amino acid side chains in stick, spheres, etc.
'b' to change the backbone display, for example to show the backbone in cartoon, spheres, etc.
'c' to change the color display, for example for the COVID-19 interface designs, you can color by chain to see the COVID-19 spike domain and the designed mini-protein.

Keep in mind that the graphics may not immediately respond and the display can randomly change.
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Billy

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Message 6774 - Posted: 30 Apr 2020, 21:02:12 UTC

Had this one fail 4508920
But it may have come from a previous release.
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koschi

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Message 6776 - Posted: 1 May 2020, 7:41:45 UTC

Works well on my Odroid C2, slot size reduced to just 8MB for a rb_04* task.

Thanks!
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Message 6780 - Posted: 1 May 2020, 8:06:19 UTC
Last modified: 1 May 2020, 8:08:07 UTC

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Raistmer

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Message 6787 - Posted: 1 May 2020, 13:37:47 UTC - in response to Message 6780.  

Got 4 WUs with errors:
https://ralph.bakerlab.org/workunit.php?wuid=4505145
https://ralph.bakerlab.org/workunit.php?wuid=4493820
https://ralph.bakerlab.org/workunit.php?wuid=4515495
https://ralph.bakerlab.org/workunit.php?wuid=4517195
All other 4.18 WUs ran sucessfully though.

</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f_32_405_1_r150793683_0</file_name>
<error_code>-240 (stat() failed)</error_code>
</file_xfer_error>
</message>

More like server than science app issue.
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Brian Nixon

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Message 6801 - Posted: 1 May 2020, 22:31:51 UTC - in response to Message 6772.  

dekim wrote:
you can change the display by pressing the keys

Nice – I never knew that!

Can you add it to the Quick guide to Rosetta and its graphics?
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Profile dekim
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Message 6802 - Posted: 2 May 2020, 0:19:20 UTC - in response to Message 6801.  

Done.
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Message boards : News : Rosetta version 4.18 released for testing



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