Rosetta version 4.18 released for testing

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Profile dekim
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Message 6766 - Posted: 30 Apr 2020, 17:11:45 UTC

Please provide feedback in the discussion thread.
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Message 6768 - Posted: 30 Apr 2020, 17:13:12 UTC

The improvements in this update include:

1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database.

2. Checkpointing added to the Rosetta comparative modeling method.

Please test these updates and let us know if there are any issues. Thanks!
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WezH

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Message 6769 - Posted: 30 Apr 2020, 17:43:59 UTC
Last modified: 30 Apr 2020, 17:46:11 UTC

No tasks available, maybe because about 4500 (4.18 and older) of them are in five Top20 hosts....

Maybe max wu per host should be implemented, wider spread to different computers...
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Message 6770 - Posted: 30 Apr 2020, 18:29:44 UTC - in response to Message 6768.  
Last modified: 30 Apr 2020, 18:31:50 UTC

The improvements in this update include:

1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database.

2. Checkpointing added to the Rosetta comparative modeling method.

Please test these updates and let us know if there are any issues. Thanks!


Normal "Show Graphics" and screen saver graphics appear to be working under OS X with the 4.18 app.

More info: There is a 10-15 second delay in starting the screensaver, the screen goes black and seems to not work, but this just may be a Boinc thing. I don't run the screensaver so can't comment if this is normal. The screen saver does eventually kick in and act normally.
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Message 6771 - Posted: 30 Apr 2020, 18:32:25 UTC - in response to Message 6770.  

That's normal
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Profile dekim
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Message 6772 - Posted: 30 Apr 2020, 19:13:39 UTC
Last modified: 30 Apr 2020, 19:21:55 UTC

Just for fun, a reminder for those who are opening up the graphics window, you can change the display by pressing the keys:

's' to change the side chain display, for example to show amino acid side chains in stick, spheres, etc.
'b' to change the backbone display, for example to show the backbone in cartoon, spheres, etc.
'c' to change the color display, for example for the COVID-19 interface designs, you can color by chain to see the COVID-19 spike domain and the designed mini-protein.

Keep in mind that the graphics may not immediately respond and the display can randomly change.
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Billy

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Message 6774 - Posted: 30 Apr 2020, 21:02:12 UTC

Had this one fail 4508920
But it may have come from a previous release.
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koschi

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Message 6776 - Posted: 1 May 2020, 7:41:45 UTC

Works well on my Odroid C2, slot size reduced to just 8MB for a rb_04* task.

Thanks!
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Fritzhuber

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Message 6780 - Posted: 1 May 2020, 8:06:19 UTC
Last modified: 1 May 2020, 8:08:07 UTC

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Raistmer

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Message 6787 - Posted: 1 May 2020, 13:37:47 UTC - in response to Message 6780.  

Got 4 WUs with errors:
https://ralph.bakerlab.org/workunit.php?wuid=4505145
https://ralph.bakerlab.org/workunit.php?wuid=4493820
https://ralph.bakerlab.org/workunit.php?wuid=4515495
https://ralph.bakerlab.org/workunit.php?wuid=4517195
All other 4.18 WUs ran sucessfully though.

</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f_32_405_1_r150793683_0</file_name>
<error_code>-240 (stat() failed)</error_code>
</file_xfer_error>
</message>

More like server than science app issue.
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Brian Nixon

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Message 6801 - Posted: 1 May 2020, 22:31:51 UTC - in response to Message 6772.  

dekim wrote:
you can change the display by pressing the keys

Nice – I never knew that!

Can you add it to the Quick guide to Rosetta and its graphics?
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Profile dekim
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Message 6802 - Posted: 2 May 2020, 0:19:20 UTC - in response to Message 6801.  

Done.
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madunmalik

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Message 6947 - Posted: 4 Feb 2021, 19:17:17 UTC - in response to Message 6802.  

oke
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Message 7016 - Posted: 30 Jun 2021, 11:53:35 UTC

that is good .
http://latelys.com I will try it lately[/code]
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Message 7103 - Posted: 15 Dec 2021, 8:27:05 UTC

The second storage option internally is also present. The other option is "choose the region to be stored in garmin.com/express".
This option allows you to select your preferred location. You can pick or replace the region that suits you of your choice.
Click"Continue". The new page will open with a page for selecting a region.
Here is the list. You can select the region using the search.
The selected region will be highlighted in Garmin com express blue.
Only the region you have selected will be downloaded, other regions won't be downloaded.
If the area you're interested in is not available then you'll need an SD card or memory card with Between 4 and 32 GB.
If you wish to download the entire map, join to the SD card. Click the Continue option. The download or update process will start.
When the update is completed, Garmin com express will let you know about the benefits by displaying the form of a green box.
Once you have done that, you can remove or unplug this Garmin express device from your computer.
Read more :
Garmin com express
garmin express
garmin.com express
garmin.com/express
Garmin com express
garmin express
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Message 7248 - Posted: 26 Aug 2022, 13:40:05 UTC - in response to Message 6772.  
Last modified: 26 Aug 2022, 13:40:14 UTC

</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f_32_405_1_r150793683_0</file_name>
<error_code>-240 (stat() failed)</error_code>
</file_xfer_error> https://brokerinfo.eu/bitqt-opinie/
</message>
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Jay Eichelberger
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Message 7268 - Posted: 4 Nov 2022, 16:56:08 UTC - in response to Message 6769.  

Great idea.
Can it be implemented?
Jay
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Luis

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Message 7277 - Posted: 22 Nov 2022, 13:25:44 UTC - in response to Message 6766.  

Hi,
You can find all different cheap licences on eBay US by searching through https://eshopfirst.com/ebay-usa/
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Message 7282 - Posted: 1 Dec 2022, 2:06:38 UTC - in response to Message 6766.  

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Message 7344 - Posted: 14 Apr 2023, 6:25:39 UTC

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Message boards : News : Rosetta version 4.18 released for testing



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