Rosetta version 4.18 released for testing

Author	Message
dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6766 - Posted: 30 Apr 2020, 17:11:45 UTC Please provide feedback in the discussion thread. ID: 6766 · Reply Quote

dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6768 - Posted: 30 Apr 2020, 17:13:12 UTC The improvements in this update include: 1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database. 2. Checkpointing added to the Rosetta comparative modeling method. Please test these updates and let us know if there are any issues. Thanks! ID: 6768 · Reply Quote

WezH Send message Joined: 24 Apr 20 Posts: 6 Credit: 181,771 RAC: 0	Message 6769 - Posted: 30 Apr 2020, 17:43:59 UTC Last modified: 30 Apr 2020, 17:46:11 UTC No tasks available, maybe because about 4500 (4.18 and older) of them are in five Top20 hosts.... Maybe max wu per host should be implemented, wider spread to different computers... ID: 6769 · Reply Quote

CIA Send message Joined: 5 Apr 20 Posts: 13 Credit: 111,953 RAC: 0	Message 6770 - Posted: 30 Apr 2020, 18:29:44 UTC - in response to Message 6768. Last modified: 30 Apr 2020, 18:31:50 UTC The improvements in this update include: 1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database. 2. Checkpointing added to the Rosetta comparative modeling method. Please test these updates and let us know if there are any issues. Thanks! Normal "Show Graphics" and screen saver graphics appear to be working under OS X with the 4.18 app. More info: There is a 10-15 second delay in starting the screensaver, the screen goes black and seems to not work, but this just may be a Boinc thing. I don't run the screensaver so can't comment if this is normal. The screen saver does eventually kick in and act normally. ID: 6770 · Reply Quote

dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6771 - Posted: 30 Apr 2020, 18:32:25 UTC - in response to Message 6770. That's normal ID: 6771 · Reply Quote

dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6772 - Posted: 30 Apr 2020, 19:13:39 UTC Last modified: 30 Apr 2020, 19:21:55 UTC Just for fun, a reminder for those who are opening up the graphics window, you can change the display by pressing the keys: 's' to change the side chain display, for example to show amino acid side chains in stick, spheres, etc. 'b' to change the backbone display, for example to show the backbone in cartoon, spheres, etc. 'c' to change the color display, for example for the COVID-19 interface designs, you can color by chain to see the COVID-19 spike domain and the designed mini-protein. Keep in mind that the graphics may not immediately respond and the display can randomly change. ID: 6772 · Reply Quote

Billy Send message Joined: 29 Jan 07 Posts: 14 Credit: 7,865 RAC: 0	Message 6774 - Posted: 30 Apr 2020, 21:02:12 UTC Had this one fail 4508920 But it may have come from a previous release. ID: 6774 · Reply Quote

koschi Send message Joined: 31 Mar 20 Posts: 1 Credit: 2,558 RAC: 0	Message 6776 - Posted: 1 May 2020, 7:41:45 UTC Works well on my Odroid C2, slot size reduced to just 8MB for a rb_04* task. Thanks! ID: 6776 · Reply Quote

Fritzhuber Send message Joined: 23 Mar 20 Posts: 2 Credit: 11,958 RAC: 0	Message 6780 - Posted: 1 May 2020, 8:06:19 UTC Last modified: 1 May 2020, 8:08:07 UTC Got 4 WUs with errors: https://ralph.bakerlab.org/workunit.php?wuid=4505145 https://ralph.bakerlab.org/workunit.php?wuid=4493820 https://ralph.bakerlab.org/workunit.php?wuid=4515495 https://ralph.bakerlab.org/workunit.php?wuid=4517195 All other 4.18 WUs ran sucessfully though. ID: 6780 · Reply Quote

Raistmer Send message Joined: 24 Apr 20 Posts: 8 Credit: 2,010 RAC: 0	Message 6787 - Posted: 1 May 2020, 13:37:47 UTC - in response to Message 6780. Got 4 WUs with errors: https://ralph.bakerlab.org/workunit.php?wuid=4505145 https://ralph.bakerlab.org/workunit.php?wuid=4493820 https://ralph.bakerlab.org/workunit.php?wuid=4515495 https://ralph.bakerlab.org/workunit.php?wuid=4517195 All other 4.18 WUs ran sucessfully though. </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f_32_405_1_r150793683_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> </message> More like server than science app issue. ID: 6787 · Reply Quote

Brian Nixon Send message Joined: 14 Apr 20 Posts: 5 Credit: 5,933 RAC: 0	Message 6801 - Posted: 1 May 2020, 22:31:51 UTC - in response to Message 6772. dekim wrote: you can change the display by pressing the keys Nice – I never knew that! Can you add it to the Quick guide to Rosetta and its graphics? ID: 6801 · Reply Quote

dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0	Message 6802 - Posted: 2 May 2020, 0:19:20 UTC - in response to Message 6801. Done. ID: 6802 · Reply Quote

Jay Eichelberger Send message Joined: 4 Nov 22 Posts: 1 Credit: 0 RAC: 0	Message 7268 - Posted: 4 Nov 2022, 16:56:08 UTC - in response to Message 6769. Great idea. Can it be implemented? Jay ID: 7268 · Reply Quote

Luis Send message Joined: 22 Nov 22 Posts: 2 Credit: 0 RAC: 0	Message 7277 - Posted: 22 Nov 2022, 13:25:44 UTC - in response to Message 6766. Hi, You can find all different cheap licences on eBay US by searching through https://eshopfirst.com/ebay-usa/ ID: 7277 · Reply Quote

intcodecor Send message Joined: 27 Oct 22 Posts: 10 Credit: 0 RAC: 0	Message 7282 - Posted: 1 Dec 2022, 2:06:38 UTC - in response to Message 6766. Welcome to my website?https://www.intcodecor.com/ Intco Decor One-stop Home Improvement Solution: 3D Wall Panels, Wall Cladding, Skirting Boards, Wall Moldings, Crown Molding, and Decking. ID: 7282 · Reply Quote