Posts by AdeB

1) Message boards : RALPH@home bug list : Minirosetta 3.05 (Message 5291) Posted 9 May 2011 by AdeB Post: This task: Valid and Success, but it ran twice??? stderr out: <core_client_version>6.10.58</core_client_version> <![CDATA[ <stderr_txt> [2011- 5- 8 16:37:52:] :: BOINC:: Initializing ... ok. [2011- 5- 8 16:37:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 14400 ====================================================== DONE :: 10 starting structures 19496.9 cpu seconds This process generated 10 decoys from 10 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 5- 9 6:52:14:] :: BOINC:: Initializing ... ok. [2011- 5- 9 6:52:14:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 14400 ====================================================== DONE :: 2 starting structures 19550.3 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> ]]> Adeb
2) Message boards : RALPH@home bug list : Minirosetta 3.05 (Message 5289) Posted 8 May 2011 by AdeB Post: All my MVH_2s wus have problem with graphic... Here graphics are fine. Except for very strange values for Total credit (8.66292E+71) and RAC (2.05568E-24), but it has always been like that. AdeB
3) Message boards : RALPH@home bug list : minirosetta 2.17 (Message 5230) Posted 16 Dec 2010 by AdeB Post: task: 2008439 ERROR: Option matching -relax:fastrelax_repeats not found in command line top-level context AdeB
4) Message boards : RALPH@home bug list : minirosetta 2.17 (Message 5208) Posted 4 Nov 2010 by AdeB Post: Task: 1978682 Workunit: t591__boinc_rosetta_cm_loopbuild_threading_cst_relax_wangyr_IGNORE_THE_REST_15010_10 stderr out: ERROR: Option matching -relax:fastrelax_repeats not found in command line top-level context AdeB
5) Message boards : RALPH@home bug list : Minirosetta 2.14 (Message 5171) Posted 7 Sep 2010 by AdeB Post: SAXS-rescore-1qfjC__14882_5_0 stderr out: ERROR: ERROR: Unable to open silent_input file: 'default.out' ERROR:: Exit from: src/core/io/silent/SilentFileData.cc line: 86 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Watchdog active. AdeB
6) Message boards : RALPH@home bug list : Minirosetta 2.14 (Message 5166) Posted 6 Sep 2010 by AdeB Post: SAXS-rescore-1ks9A__14879_6_1 The same error as Snagletooth. ma 06 sep 2010 17:07:49 CEST ralph@home Output file SAXS-rescore-1ks9A__14879_6_1_0 for task SAXS-rescore-1ks9A__14879_6_1 absent stderr out: ====================================================== DONE :: 1 starting structures 13314.1 cpu seconds This process generated 9 decoys from 9 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>SAXS-rescore-1ks9A__14879_6_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> AdeB
7) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5082) Posted 26 Feb 2010 by AdeB Post: 1544269 1544268 1544270 1544271 After different calculation times, all the same error: ERROR: [ERROR] Unable to open constraints file: aqp9_.dist_csts ERROR:: Exit from: ....srccorescoringconstraintsConstraintIO.cc line: 332 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Same error in task 1750870. AdeB
8) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5071) Posted 13 Feb 2010 by AdeB Post: File transfer errors!!! Task 1740222: <file_xfer_error> <file_name>igfhum_brub1_2dsrI_1ZZK_ProteinInterfaceDesign_12Feb2010_14321_1_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> Simmilar errors in tasks 1740267 and 1741847. AdeB
9) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5068) Posted 8 Feb 2010 by AdeB Post: Task 1738713 was marked Invalid. One of those 578 decoys must have been valid! AdeB
10) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5060) Posted 3 Feb 2010 by AdeB Post: Task 1734255 <message> Maximum memory exceeded </message> AdeB
11) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5054) Posted 30 Jan 2010 by AdeB Post: Task 1731436 had a normal runtime, was a success and is valid; however there is an ERROR in stderr out: ERROR: unknown atom_name: ILE CG ERROR:: Exit from: src/core/chemical/ResidueType.cc line: 1382 AdeB
12) Message boards : RALPH@home bug list : minirosetta 2.01/2.02 (Message 5006) Posted 4 Dec 2009 by AdeB Post: Task: 1672358 Name: lr_mix_sc12_run01_rlbd_1acf_SAVE_ALL_OUT_IGNORE_THE_REST_lr10_DECOY_13301_1_0 stderr out: [color=red]ERROR: res2.connections_to_residue( res1 ).size() == 1 ERROR:: Exit from: src/core/scoring/etable/count_pair/CountPairFactory.cc line: 64 [/color] AdeB
13) Message boards : RALPH@home bug list : Minirosetta 2.00 (Message 5004) Posted 26 Nov 2009 by AdeB Post: It looks like sooner or later most those lr5_combine_smooth_torsion_it00_redo_rama tasks end with: SIGSEGV: segmentation violation. errors: 1666732 1667706 1668524 1668719 1668876 1669758 and one succes: 1669780 AdeB
14) Message boards : RALPH@home bug list : Minirosetta 2.00 (Message 5003) Posted 26 Nov 2009 by AdeB Post: Task 1666440 ended with SIGSEGV: segmentation violation. Workunit: lr5_combine_smooth_torsion_it00_redo_rama00_A_rlbn_1ten_SAVE_ALL_OUT_IGNORE_THE_REST_NATIVE_NOCON_13223_1 Computer / OS: AMD Phenom(tm) II / Linux AdeB
15) Message boards : RALPH@home bug list : Minirosetta 2.00 (Message 5002) Posted 24 Nov 2009 by AdeB Post: Another error: task 1663470 Workunit: 2cgq_1yul.revert2.pdb.gz_dock_rmsd.xml__13145_7 Computer / OS: AMD Athlon XP 2000 / linux stderr out: [color=red]* glibc detected * free(): invalid next size (fast): 0x0fcbd1b8 ***[/color] SIGABRT: abort called Stack trace (28 frames): [0x9667f13] [0x9691de8] [0xffffe420] ... etc AdeB
16) Message boards : RALPH@home bug list : Minirosetta 2.00 (Message 5001) Posted 23 Nov 2009 by AdeB Post: Quick failure in task 1662439. Workunit: 2cgq_1yul.revert2.pdb.gz_dock_rmsd.xml__13145_1. Computer / OS: AMD Phenom II / linux stderr out: ... Starting watchdog... Watchdog active. # cpu_run_time_pref: 14400 SIGABRT: abort called Stack trace (24 frames): [0x9667f13] [0x9691de8] [0xf7fd8400] ... etc
17) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4970) Posted 20 Sep 2009 by AdeB Post: Interesting stderr out in this task. stderr out: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> <stderr_txt> OGFUNC 50 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 9 0 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.7 8 0.02 8.7 8 0.02 9 3 0.02 9 0 0.02 9 0 0.02 9 3 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 9.1 3 0.02 8.6 6 0.02 bounds error (radius =8.96584), def = SOGFUNC 50 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 8.6 6 0.02 8.6 6 0.02 9 0 0.02 9 0 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 3 0.02 8.7 8 0.02 8.7 8 0.02 9 3 0.02 9 0 0.02 9 0 0.02 9 3 0.02 8.6 6 0.02 9 3 0.02 9 0 0.02 8.6 6 0.02 9 0 0.02 9.1 3 0.02 8.6 6 0.02 bounds error (radius =8.33761), def = SOGFUNC 50 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 3 0.02 8.1 5 0.02 8.1 3 0.02 8.1 3 0.02 8.1 5 0.02 8.1 5 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 7.9 8 0.02 8.2 4 0.02 8.2 4 0.02 7.9 8 0.02 8.1 5 0.02 8.1 5 0.02 7.9 8 0.02 8.1 3 0.02 7.9 8 0.02 8.1 5 0.02 8.1 3 0.02 8.1 5 0.02 8.2 0 0.02 8.1 3 0.02 ... and many more AdeB
18) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4933) Posted 25 Aug 2009 by AdeB Post: I had to kill this task. It made other applications crash and claimed almost all of the memory (including virtual memory). AdeB
19) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4927) Posted 22 Aug 2009 by AdeB Post: <message> Maximum memory exceeded </message> in task 1578464 AdeB
20) Message boards : RALPH@home bug list : Minirosetta 1.93 (Message 4925) Posted 16 Aug 2009 by AdeB Post: Here are two more: 1576594 1577231 AdeB

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