Posts by kotenok2000

1) Message boards : RALPH@home bug list : Rosetta 4.27 (Message 7500) Posted 13 Apr 2024 by kotenok2000 Post: We should restrict registering to invites-only to reduce spam posts. At least for Ralph. Projects that have implemented registration protection: https://gene.disi.unitn.it/test/ https://srbase.my-firewall.org/sr5/ https://lhcathomedev.cern.ch/lhcathome-dev/
2) Message boards : Number crunching : Graphics do not work with linux version of rosetta beta. (Message 7499) Posted 13 Apr 2024 by kotenok2000 Post: Graphics do not work with linux version of rosetta beta. When i start graphical app it immediately closes and outputs this in stderrgfx.txt: user@ubuntutheoryvm:/var/lib/boinc/slots/6$ cat /var/lib/boinc/slots/6/stderrgfx.txt ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145 23:25:39 (68987): called boinc_finish(0) It should look for database at /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database , not /var/lib/boinc/projects/database It works if i run graphical app manually with manually specified database path user@ubuntutheoryvm:/var/lib/boinc/slots/6$ ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/ Starting graphics.. core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: 2023.36.post.dev+5.master.76e2f63f750 76e2f63f750b32d50338385a5e1d99ecb36da226 git@github.com:RosettaCommons/main.git 2023-09-11T11:01:30 core.init: command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/ basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=935815675 seed_offset=0 real_seed=935815675 basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=935815675 RG_type=mt19937 Opened semaphore Attached shared memory segment core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 985 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.971783 seconds.
3) Message boards : Current tests : New app in VirtualBox (Message 7464) Posted 20 Dec 2023 by kotenok2000 Post: If you crunch 256 threads you will need 2826 GB of space. And 1572864 MB of RAM
4) Message boards : Current tests : New app in VirtualBox (Message 7460) Posted 18 Dec 2023 by kotenok2000 Post: It copies 11 gb vdi to slot directory, so it still doesn't use multiattach, unlike lhc@home.
5) Message boards : Current tests : New app in VirtualBox (Message 7458) Posted 18 Dec 2023 by kotenok2000 Post: Can you test multiattach images? https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14930#104952 This way it won't use 11 gb of hdd for every core.
6) Message boards : RALPH@home bug list : Rosetta 4.24 (Message 7328) Posted 28 Mar 2023 by kotenok2000 Post: Why does ralph try to extract database locally for every slot? Rosetta extracted database to boinc.bakerlab.org_rosetta and all workunits use shared databse.
7) Message boards : RALPH@home bug list : Rosetta 4.23 (Message 7322) Posted 28 Mar 2023 by kotenok2000 Post: Why does every ralph task extract entire database to slot directory? Rosetta uses shared database in project directory.