Post bugs related to minirosetta v1.19 here!

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Project status display shows the feeder is down.
BOINC Client shows :

Message from server: Project encountered internal error: shared memory

This has been occuring at least since 03:19 Pacific time.
Can't complete a scheduler update to report my completed task.

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A compute error to report on 2900+ seconds of CPU time.

I was the wingman on this task, and I got the same error as the first person who attempted it.

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RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!

Another compute error to report, although this one needed only 20 seconds to error out.

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RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!

Another compute error to report, although this one needed only 20 seconds to error out.

My mtlr_test1_3612_2_0 was apparently a sibling of the mentioned mtlr_test1_3612_3_0 and exited nearly the same way:

<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value

</stderr_txt>

Peter

Rack up another "compute error" for me and my wing man. This one failed immediately at start up on my PC:

Task ID 949788
Name fa_max_dis_9-1c8cA-test_2008-5-6_3655_9_1
Workunit 842742
Outcome Client error
Client state Compute error
Exit status 1 (0x1)

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[

<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -psipred_ss2:1c8cA.fa_max_dis_9.psipred_ss2 not found in command line top-level context

</stderr_txt>

]]>

---

Rack up another "compute error" for me and my wing man. This one failed immediately at start up on my PC:

Task ID 949788
Name fa_max_dis_9-1c8cA-test_2008-5-6_3655_9_1
Workunit 842742
Outcome Client error
Client state Compute error
Exit status 1 (0x1)

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[

<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -psipred_ss2:1c8cA.fa_max_dis_9.psipred_ss2 not found in command line top-level context

</stderr_txt>

]]>

Similar error in resultid=950615

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
ERROR: Option matching -psipred_ss2:1opd_.fa_max_dis_9.psipred_ss2 not found in command line top-level context

</stderr_txt>
]]>

Here's another error like the last several reported in this thread:
ERROR: Option matching -psipred_ss2:1tul_.fa_max_dis_9.psipred_ss2 not found in command line top-level context

I was the wingman. Both computers kicked this one out in 0 seconds.

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RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!

Add one more "compute error" for me and my wing man. This also failed immediately at start up on my PC:

Task ID 950663
Name fa_max_dis_9-1bq9A-test_2008-5-6_3655_3_1
Workunit 842405

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[

<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -psipred_ss2:1bq9A.fa_max_dis_9.psipred_ss2 not found in command line top-level context

</stderr_txt>

]]>

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Hi

I just had this error:

2008/05/08 0:06:50|ralph@home|Starting fa_max_dis_9-1cg5B-test_2008-5-6_3655_3_0
2008/05/08 0:06:51|ralph@home|Starting task fa_max_dis_9-1cg5B-test_2008-5-6_3655_3_0 using minirosetta version 119
2008/05/08 0:07:09|ralph@home|Computation for task fa_max_dis_9-1cg5B-test_2008-5-6_3655_3_0 finished
2008/05/08 0:07:09|ralph@home|Output file fa_max_dis_9-1cg5B-test_2008-5-6_3655_3_0_0 for task fa_max_dis_9-1cg5B-test_2008-5-6_3655_3_0 absent

<stderr_txt>
ERROR: Option matching -psipred_ss2:1cg5B.fa_max_dis_9.psipred_ss2 not found in command line top-level context
</stderr_txt>

Seems to be the same type of error as others have posted?
Rod

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Here's a new one:

ERROR: Cannot open 9-mer fragment library file: 9merfile

I was the wingman. Neither computer lasted even a full second.

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RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!

These -psipred tasks seem to be problematic:

resultid=950853

I was the wingman. Both computers errored instantly.

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RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!

This one failed in a matter of seconds. It seems a little different from the others mentioned.

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: Error: can't read sequence! Use -in::file::fasta sequence.fasta or -in::file::native native.pdb!
ERROR:: Exit from: ....srcprotocolsabinitioAbrelaxApplication.cc line: 363
called boinc_finish

</stderr_txt>
]]>

==Mike

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Don't believe everything you think.

Here's a new one:

ERROR: Cannot open 9-mer fragment library file: 9merfile

The same here, twice: mtlr_test2_S.00000001.440_3671_1_1 and mtlr_test2_S.00000001.84_3671_1_1:

process exited with code 1 (0x1, -255)
ERROR: Cannot open 9-mer fragment library file: 9merfile
ERROR:: Exit from: src/protocols/frags/TorsionFragment.cc line: 70

Peter

Three errors to report, all on different computers, but have the same error message:

WARNING: Override of option -out:nstruct sets a different value

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749

resultid=951829
resultid=951656
resultid=951591

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RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!

Same failure for me and my wingman> TorsionFragment.cc

Task ID 951570
Name mtlr_test2_S.00000001.23_3671_1_1
Workunit 843969

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: Cannot open 9-mer fragment library file: 9merfile

ERROR:: Exit from: ....srcprotocolsfragsTorsionFragment.cc line: 70
called boinc_finish

</stderr_txt>
]]>

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Same failure for me and my wingman> hbonds_geom.cc line: 749

Task ID 951690
Name mtlr_test2_S.00000001.1529_3672_1_1
Workunit 844102

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749
called boinc_finish

</stderr_txt>
]]>

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Same failure for me and my wingman> hbonds_geom.cc line: 749

Task ID 951691
Name mtlr_test2_S.00000001.1532_3672_1_1
Workunit 844103

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749
called boinc_finish

</stderr_txt>
]]>

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resultid=950809

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 14400
======================================================
DONE :: 1 starting structures 11991.7 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>1tig__BOINC_ABRELAX_IGNORE_THE_REST-S25-17-S3-17--1tig_-_3581_28_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

Rosetta mini still refuses to start on my PC (it says running but no processing ever happens) I've had this issue since 1.15 and still 1.19, and it happens on 2 of my 3 computers. I will have to keep aborting these until this gets fixed, sorry.

Could there please be a way to opt out of this mini project as well?

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