Message boards : RALPH@home bug list : All fail
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
On my Ryzen/Windows 10, all wus "degrader_site_4yc9_" failed after few seconds: <stderr_txt> |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
On my Ryzen/Windows 10, all wus "degrader_site_4yc9_" failed after few seconds: Also on my Intel mobile cpu.... |
bozz4science Send message Joined: 24 May 20 Posts: 3 Credit: 650 RAC: 0 |
Same on my end on a Win10 host. |
entity Send message Joined: 31 Mar 20 Posts: 1 Credit: 72,603 RAC: 0 |
Same on all my Linux systems |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
Also some validation errors after 3 minutes: ERROR: index has exceeded selection range! Set=69 range_size=0 Please, admin, stop this batch!! |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
Same on all my Linux systems I'm trying a linux machine. All errors also here. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
Also some validation errors after 3 minutes: And other validation errors ERROR: index has exceeded selection range! Set=10 range_size=0 |
Vato Send message Joined: 30 Jun 10 Posts: 2 Credit: 117,751 RAC: 0 |
Virtually identical errors on arm64 ubuntu 20.04.2 |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
Still downloads and still errors Please, stop it! |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
New batch seems better.... |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
After a lot of good wus, new kinds of error: 5342641 ERROR: ERROR: Unable to open file %%id111%%.pssm! 5342574 ERROR: Error in core::conformation::Conformation::residue(): The sequence position requested was greater than the number of residues in the pose. |
Bryn Mawr Send message Joined: 1 May 20 Posts: 3 Credit: 3,404 RAC: 0 |
55 WUs downloaded, 33 errored almost immediately with :- ERROR: Cannot find file '/mnt/home/bcov/sc/design/degrader/structures/params2/NXXX.params or minirosetta_database/chemical/residue_type_sets/fa_standard/residue_types//mnt/home/bcov/sc/design/degrader/structures/params2/NXXX.params' ERROR:: Exit from: src/core/chemical/residue_io.cc line: 144 BOINC:: Error reading and gzipping output datafile: default.out 03:07:07 (112938): called boinc_finish(1) </stderr_txt> The other 22 processed and valid. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
Another different error 5351337 ERROR: [ERROR] relaxscript argument fast_cart_no_ref_rosettacon2018_beta_nov16.txt should not have extensions. Additionally, fast_cart_no_ref_rosettacon2018_beta_nov16 does not appear to be a valid script name. Please look at main/database/sampling/relax_scripts/ or the wiki for valid names. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
Other errors 5352485 ERROR: Called Constraint::remap_resid method from derived class UNKNOWN_TYPE,ended up in Constraint::remap_resid |
Bryn Mawr Send message Joined: 1 May 20 Posts: 3 Credit: 3,404 RAC: 0 |
Other errors 5352485 Just come in to report exactly the same error :-) Task 5352904 ETA Plus 4 more, all 5nvx |
bozz4science Send message Joined: 24 May 20 Posts: 3 Credit: 650 RAC: 0 |
Mixed picture for me. About 50% of the tasks get validated. About 10% are deemed invalid and the remaining 40% have an error while computing listed. In all tasks be it invalid or valid I do see the following errors listed in the stderr file. ERROR: Called Constraint::remap_resid method from derived class UNKNOWN_TYPE,ended up in Constraint::remap_resid ERROR:: Exit from: ......srccorescoringconstraintsConstraint.cc line: 188 For the error during computation ones I see the following quite often: ERROR: ERROR: Unable to open file %%id040%%.pssm! ERROR:: Exit from: ......srccoresequenceSequenceProfile.cc line: 256 BOINC:: Error reading and gzipping output datafile: default.out |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
In all tasks be it invalid or valid I do see the following errors listed in the stderr file. Same here. This error is on valid and invalid wus. My default runtime is 2h, but these wus finish after 15/20 minutes |
TH1813254617 Send message Joined: 31 Mar 20 Posts: 1 Credit: 2,955 RAC: 0 |
Another task whose status is " Completed and validated" but actually errored out in 7 min 18 sec (I'm using the default run time). degrader_site_4yc9_0_plait_-2.5_bcov_20.hbnet_4_SAVE_ALL_OUT_IGNORE_THE_REST_8qm1er0f_16181_1_1 <core_client_version>7.16.11</core_client_version> <![CDATA[ <stderr_txt> command: projects/ralph.bakerlab.org/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol pdblite_boinc_120_10_tfirst--fuse--predictor_v13_degrader_plait_boinc--fuse--tslp_design_v2_degrader_plait_boinc.xml @degrader_site_4yc9_0_plait_-2.5_bcov_flags2 -in:file:silent degrader_site_4yc9_0_plait_-2.5_bcov_20.hbnet_4_SAVE_ALL_OUT_IGNORE_THE_REST_8qm1er0f.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip degrader_site_4yc9_0_plait_-2.5_bcov_20.hbnet_4_SAVE_ALL_OUT_IGNORE_THE_REST_8qm1er0f.zip @degrader_site_4yc9_0_plait_-2.5_bcov_20.hbnet_4_SAVE_ALL_OUT_IGNORE_THE_REST_8qm1er0f.flags -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3799928 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: Called Constraint::remap_resid method from derived class UNKNOWN_TYPE,ended up in Constraint::remap_resid ERROR:: Exit from: ......srccorescoringconstraintsConstraint.cc line: 188 08:20:06 (8856): called boinc_finish(0) </stderr_txt> ]]> That'd be three errors out of three WUs. The other two in late August resulted in: ERROR: Cannot find file 'mnthomebcovscdesigndegraderstructuresparams23mup.params or minirosetta_databasechemical/residue_type_sets/fa_standard/residue_types/mnthomebcovscdesigndegraderstructuresparams23mup.params' ERROR:: Exit from: ......srccorechemicalresidue_io.cc line: 144 BOINC:: Error reading and gzipping output datafile: default.out 22:52:06 (11012): called boinc_finish(1) |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 905 Credit: 1,892,541 RAC: 294 |
In all tasks be it invalid or valid I do see the following errors listed in the stderr file. Still a lot of these errors.... |
Fardringle Send message Joined: 22 Feb 06 Posts: 18 Credit: 360,436 RAC: 1,901 |
Surprisingly, I did have two tasks in the current batch complete successfully, but the vast majority failed the same way as others have reported here. |
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