RoseTTAFold All-Atom

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admindub
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Message 7504 - Posted: 21 May 2024, 23:41:42 UTC

Please post issues with RoseTTAFold All-Atom here.
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Yeti
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Message 7506 - Posted: 23 May 2024, 8:27:04 UTC

Could you please enable the settings for NVidia-GraKas in Project-Preferences ?


Supporting BOINC, a great concept !
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Jazlyn_Keppler

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Message 7507 - Posted: 23 May 2024, 9:44:19 UTC

Hi,
are you already sending WU's or later this week? Currently not receiving anything.

Best regards,
Jaz
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fzs600

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Message 7509 - Posted: 25 May 2024, 4:19:51 UTC - in response to Message 7507.  

Hello
waiting to crunch the new application
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Message 7510 - Posted: 27 May 2024, 9:29:08 UTC

Great news!!

P.S. Hope for a future opencl/sycl/rocm/oneapi/etc app that runs on all gpu (and not only nvidia)
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Message 7511 - Posted: 28 May 2024, 6:31:16 UTC - in response to Message 7504.  

Please post issues with RoseTTAFold All-Atom here.


No wus, no issues :-P
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mikey

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Message 7512 - Posted: 30 May 2024, 1:50:58 UTC - in response to Message 7511.  

I got 43 tasks and every single one of them errored out like this task:

5439065 4838692 30 May 2024, 0:25:01 UTC 30 May 2024, 0:57:18 UTC Error while computing 0.00 0.00 --- Generalized biomolecular modeling and design with RoseTTAFold All-Atom v0.00
windows_x86_64

https://ralph.bakerlab.org/results.php?hostid=49186&offset=0&show_names=0&state=6&appid=
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Fardringle

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Message 7513 - Posted: 30 May 2024, 2:45:17 UTC - in response to Message 7504.  
Last modified: 30 May 2024, 2:50:47 UTC

All tasks downloaded on a laptop with an i7-8650U CPU failed due to missing/corrupt data in the downloaded ZIP file. And only one task actually ran for a few seconds. The others all failed at zero seconds of run time.

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
The access code is invalid.
 (0xc) - exit code 12 (0xc)</message>
<stderr_txt>
[venv_a_pred_alpha_179.zip]
  End-of-central-directory signature not found.  Either this file is not
  a zipfile, or it constitutes one disk of a multi-part archive.  In the
  latter case the central directory and zipfile comment will be found on
  the last disk(s) of this archive.
unzip:  cannot find zipfile directory in venv_a_pred_alpha_179.zip,
        and cannot find venv_a_pred_alpha_179.zip.zip, period.

</stderr_txt>
]]>


https://ralph.bakerlab.org/results.php?hostid=49652&offset=0&show_names=0&state=0&appid=14
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Fardringle

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Message 7514 - Posted: 30 May 2024, 2:56:32 UTC - in response to Message 7513.  

All tasks downloaded on a laptop with an i7-8650U CPU failed due to missing/corrupt data in the downloaded ZIP file. And only one task actually ran for a few seconds. The others all failed at zero seconds of run time.

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
The access code is invalid.
 (0xc) - exit code 12 (0xc)</message>
<stderr_txt>
[venv_a_pred_alpha_179.zip]
  End-of-central-directory signature not found.  Either this file is not
  a zipfile, or it constitutes one disk of a multi-part archive.  In the
  latter case the central directory and zipfile comment will be found on
  the last disk(s) of this archive.
unzip:  cannot find zipfile directory in venv_a_pred_alpha_179.zip,
        and cannot find venv_a_pred_alpha_179.zip.zip, period.

</stderr_txt>
]]>


https://ralph.bakerlab.org/results.php?hostid=49652&offset=0&show_names=0&state=0&appid=14


And all tasks on a much more robust Ryzen 9 3950X with an RTX 3060ti have failed in exactly the same way.

https://ralph.bakerlab.org/results.php?hostid=41408&offset=0&show_names=0&state=0&appid=14
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Jazlyn_Keppler

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Message 7515 - Posted: 30 May 2024, 3:44:13 UTC - in response to Message 7514.  

I got 51 WU's and can report the same error:

30.05.2024 05:32:56 | ralph@home | Output file RF_SAVE_ALL_OUT_NOJRAN_IGNORE_THE_REST_validation_env_a_pred_378_16896_6_1_r1887259237_0 for task RF_SAVE_ALL_OUT_NOJRAN_IGNORE_THE_REST_validation_env_a_pred_378_16896_6_1 absent

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
Der Zugriffscode ist unzul?ssig.
(0xc) - exit code 12 (0xc)</message>
<stderr_txt>
[venv_a_pred_alpha_378.zip]
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the central directory and zipfile comment will be found on
the last disk(s) of this archive.
unzip: cannot find zipfile directory in venv_a_pred_alpha_378.zip,
and cannot find venv_a_pred_alpha_378.zip.zip, period.

</stderr_txt>
]]>

https://ralph.bakerlab.org/results.php?userid=731975&offset=0&show_names=0&state=6&appid=14
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zombie67 [MM]
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Message 7516 - Posted: 30 May 2024, 4:00:37 UTC
Last modified: 30 May 2024, 4:02:24 UTC

I cannot tell if the tasks will error out or complete successfully yet. The binaries are taking forever to download. Only 4% after 2.5 hours. If nothing changes, it will take 62 hours to complete.
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Profile [VENETO] boboviz

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Message 7517 - Posted: 30 May 2024, 4:15:27 UTC - in response to Message 7514.  

And all tasks on a much more robust Ryzen 9 3950X with an RTX 3060ti have failed in exactly the same way.

https://ralph.bakerlab.org/results.php?hostid=41408&offset=0&show_names=0&state=0&appid=14


Seems not cpu-related
All errors also on my ryzen 3600x...
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zombie67 [MM]
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Message 7518 - Posted: 30 May 2024, 6:02:32 UTC - in response to Message 7516.  
Last modified: 30 May 2024, 6:04:11 UTC

I cannot tell if the tasks will error out or complete successfully yet. The binaries are taking forever to download. Only 4% after 2.5 hours. If nothing changes, it will take 62 hours to complete.


Yep. Same errors as everyone else.
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DerLetzteGermane

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Message 7519 - Posted: 30 May 2024, 8:08:14 UTC

Same errors.
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BlisteringSheep

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Message 7520 - Posted: 1 Jun 2024, 0:29:42 UTC - in response to Message 7512.  

I had the exact same results. All RoseTTAFold All-Atom failed with
<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
The access code is invalid.
(0xc) - exit code 12 (0xc)</message>
<stderr_txt>
[venv_a_pred_alpha_383.zip]
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the central directory and zipfile comment will be found on
the last disk(s) of this archive.
unzip: cannot find zipfile directory in venv_a_pred_alpha_383.zip,
and cannot find venv_a_pred_alpha_383.zip.zip, period.

</stderr_txt>
]]>
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Profile [VENETO] boboviz

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Message 7521 - Posted: 2 Jun 2024, 11:19:20 UTC

Some daemons are down since yesterday.
Maybe they are working on
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Profile [VENETO] boboviz

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Message 7522 - Posted: 4 Jun 2024, 14:54:45 UTC - in response to Message 7521.  

Maybe they are working on

Well, maybe not :-P
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Sabroe_SMC

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Message 7523 - Posted: 5 Jun 2024, 11:31:42 UTC

15 times the old and new sterr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
Der Zugriffscode ist unzul?ssig.
(0xc) - exit code 12 (0xc)</message>
<stderr_txt>
[venv_b_pred_alpha_193.zip]
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the central directory and zipfile comment will be found on
the last disk(s) of this archive.
unzip: cannot find zipfile directory in venv_b_pred_alpha_193.zip,
and cannot find venv_b_pred_alpha_193.zip.zip, period.

</stderr_txt>
]]>

I think they dont did anything....
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Mr P Hucker
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Message 7524 - Posted: 5 Jun 2024, 12:17:39 UTC - in response to Message 7523.  
Last modified: 5 Jun 2024, 12:37:58 UTC

I get the same problem. Looking at the stderr output, the zip file seems invalid. Yet I can unzip the file ok in windows.

Ah, it's the wrong file! Boinc is looking for venv_b_pred_alpha_68.zip, yet it downloaded venv_b_pred_alpha_194.zip.

Whatever program is unzipping it reports "invalid file" when it means "missing file". Very odd. It's like saying "your car doesn't look right" when somebody's stolen it.
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Profile [VENETO] boboviz

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Message 7525 - Posted: 5 Jun 2024, 12:24:31 UTC - in response to Message 7523.  

I think they dont did anything....


+1
Same error on all my computers...
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